BAC Information

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BAC

Clone NameMSMg01-398P04
Chromosome8 (Build37)
Map Location 126,692,244 - 126,692,363
singlet/doubletsinglet
Overlap geneLOC100042535
Upstream geneLOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530
Downstream geneGalnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398P04.T7 (MSMg01no398_p04.b1)MSMg01-398P04.TJ (MSMg01no398_p04.g1)
ACCAG498931AG498932
length823794
length of high quality
(start - end)
43 (119 - 161)119 (120 - 238)
definitionCHROMAT_FILE: MSMg01no398_p04.b1 PHD_FILE: MSMg01no398_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:50 2005CHROMAT_FILE: MSMg01no398_p04.g1 PHD_FILE: MSMg01no398_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTAAACGANNCCANAGTCAGCAGAGCCNGGAANCCAAGN
NCATACCAGACAGGGCGACCCAGNCAGTTCCAGGCCAGCCATGGCTACAC
AGCGAGATTTGGTCTGGGGAAAAAAAGGAGGCTATTTGACTAAATCTAAA
CTCATCCAAGTATAGGTCATGTACTCACTAATTTATTCCATCATTTACAA
ACAAATTTGGTTTCCGACAGGTCGTATGTGCACACCCTCCCTTTTGCAAT
CTGGATTAAAAAATGAAAGACACGTGCGCGCGCGCGTGTACACGCACACC
CACTCCTCTTCTTTTTTTCTCACCCCCCCCCCCCCTTTCCGTGCCTGTCT
CCTTTTTGCCTATCTCCTTCCTTCCCTCGAACGTTGCGCCACTTTTATAA
ACTTTCCCCTGCCCCCCCCCTTCTTTGTTGGCCACGTTCTCCCTCGCTTT
TCCCTATTTATTCTCTTATTTCGCCTCCTTTCGCCCCACCTCCTCCCCCC
TTTGCACCCCCACACCACCTTTCCACCCTCTCTCTCCCTACTCTTATTCT
TCTTCTTCTCTTTCCTTTCTTCTCTCCTCATTCCCCTTCCAAATCCCTAA
CCCCTCCTCCCCCTTCCTCCCCTTCCACCCATTTTCCCACAACTTTCCCT
TCCCCCCTTCTTGTCATTTTCCTCTTTCCTCTCCCATATTCCGTCCCTTT
TCTTCCCCTTTCCCCTCTCTCCACTCTTTTCTTCTAATCTTCCCTTCTTT
CTTTCCAACTTTCTCTCCCTGTTTCCCCTTTTCTCCACTCATTTATTTCC
TTTTTGCTCCCCCCCTCCCTCCN
ATGAAGTGCGAGGCCTGGNGGNGNCTGGCTTGGCTATCGCNNGAANNANA
GAAGGTTAACGCCATCTCCCANGAGANAGGNNANNAGNGGGGGACACCAN
CAAGGNNATTCTTTACCCCCAAATACATGGAGCTTGCCAGGCTCCAGAAC
AAATCACATTTGCTGTGTTGCCAAAAGGAAAATCTATTTCTTGATATTGT
TTAGAGCAGAAAACTACATATTGATTTAAAAATACAAAGGAGTTTTTTTT
GTCCCCAAACTCAGCTATAACATGATGAAGAATAAGAAGGAGCAAGCCAG
CAGACAGAACTTTTTTTTTTTTCCAGGAAAAGAAGAACAAGAAGAACAAG
AAGAATATCCCCCCCCCCCCCGGGCGCGGGGGGGGCCCACGAGAAAAGAA
AAGGTTTTCCCCCCCCGCGTGTTCTTTTTTCACCACACCCTCCTTCTTTC
TCTCTACTCTCTCCTCATCTCACCCCCCCCTCTCCTCCACTCCTCTCCCT
TCTTCCTCACACCTTCATGCCCTTCTCTCTCCTCACCACCCACCCCCCCG
CTCTTTCTTAACCTCCTCTCCTCCCCCATTTCCCTCTCCCCCTCCTCTAT
TCTACTTCCAACCCCACCTCATTTTAGGAACTTTCCCCCCCTCCTATCAA
TTCTCACTACCCCCCCCTTTTTTTTTTTTTTTTTTACCTCGAGCAATCAC
CCCTCCTCCTATCCTCCCCTCCCTCTCACACCCCACCCAACTATTATCTT
CACTCCCGTGCAATAAGTCTCTCCGTCTCCCACTTACCCCGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_p04.g1 MSMg01no398_p04.g1 CHROMAT_FILE:
MSMg01no398_p04.g1 PHD_FILE: MSMg01no398_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:50 2005
         (119 letters)



>mm_chr8_126692044_126692563
          Length = 520

 Score =  224 bits (116), Expect = 1e-63
 Identities = 119/120 (99%), Gaps = 1/120 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatacatggagcttgccaggctccagaacaaatcacatttgctgtgttgccaaaagg- 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 320 caaatacatggagcttgccaggctccagaacaaatcacatttgctgtgttgccaaaagga 261

                                                                       
Query: 60  aaaatctatttcttgatattgtttagagcagaaaactacatattgatttaaaaatacaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaatctatttcttgatattgtttagagcagaaaactacatattgatttaaaaatacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 520
Length adjustment: 8
Effective length of query: 111
Effective length of database: 512
Effective search space:    56832
Effective search space used:    56832
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)