Query= MSMg01no399_a04.b1 MSMg01no399_a04.b1 CHROMAT_FILE:
MSMg01no399_a04.b1 PHD_FILE: MSMg01no399_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:55 2005
(673 letters)
>mm_chr8_101496089_101497162
Length = 1074
Score = 1122 bits (580), Expect = 0.0
Identities = 643/668 (96%), Gaps = 8/668 (1%)
Strand = Plus / Plus
Query: 7 gaattcttacctatttcctgtctcagctcattggccaatcaactttttattgacaggtga 66
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 207 gaattcttacctatttcctgtctcagatcattggccaatcagctttttattgacaggtga 266
Query: 67 tactcacacagtccacaacagaatctctaccatctgtgcacataagtctacagttctcta 126
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 267 tactcacacagtacacaacagaatctctaccatttgtgcacataagtctacagttctcta 326
Query: 127 aagtcaagggcaagagtagctttatacataaaaaagtaaagtgatattttttcaagtcag 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagtcaagggcaagagtagctttatacataaaaaagtaaagtgatattttttcaagtcag 386
Query: 187 tgattggacaccatttatctcatccacattttgttttcattagtgcagcatgaagcatta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgattggacaccatttatctcatccacattttgttttcattagtgcagcatgaagcatta 446
Query: 247 atgatttctatcatactgaaatgttcagactttttgcacaacttttcacataatactaag 306
||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 447 atgatttctctcatattgaaatgttcagactttttgcacaactttttacataatactaag 506
Query: 307 tgcccaagatggagaaaaaaaaggtgattgagagccttatctctaacacttttt-gtgta 365
| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||| |||||
Sbjct: 507 ttcccaagatggagaaacaaaaggtgattgagagccttatttctaatacttttttgtgta 566
Query: 366 tcactgtgggctgaagattgtatctgaggtttcacatgtattaggtaagcacactaccac 425
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 567 tcactgtgggctgaagattgtatctgaggtttcacatgtgttaggtaagcacactaccac 626
Query: 426 caaaatatatgtccagacccttaagagctattctttataatattctaaattcttagtatt 485
|||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct: 627 caaaatatatctccagacacttaagagctattcttcataatattgtaaattcttagtatt 686
Query: 486 ttaagtttattttaagatttgaaagataaaattgtatgtgttgataatgtgcaacgtgaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 687 ttaagtttattttaagatttgaaagataaaattgtatgtgttgataatgtg-------aa 739
Query: 546 aattttaagaattttcaagaatgtatattgtggaatgtgtagtttagcaaattaaatgaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aattttaagaattttcaagaatgtatattgtggaatgtgtagtttagcaaattaaatgaa 799
Query: 606 tacattaatttgaatcataattatgttatggagaacattttatattcattcttgattgtt 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 800 tacattaatttgaatcataattatgttatggagaacattttatattcattcttgattggt 859
Query: 666 taaaaaca 673
||||||||
Sbjct: 860 taaaaaca 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space: 705432
Effective search space used: 705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no399_a04.g1 MSMg01no399_a04.g1 CHROMAT_FILE:
MSMg01no399_a04.g1 PHD_FILE: MSMg01no399_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:55 2005
(484 letters)
>mm_chr8_101666136_101667018
Length = 883
Score = 888 bits (459), Expect = 0.0
Identities = 477/483 (98%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 1 aaatgtactctaaacatttggcaataggaaaatcttgcagattctgtaaatgctctaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 682 aaatgtactctaaacatttggcaataggaaaatcttgcagattctgtaaattctctaaag 623
Query: 61 atgcaagtgtggcagaaaaaaatacaagtgatattgctttgcatctccaatgttagggac 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atgcaagtgtggcag-aaaaaatacaagtgatattgctttgcatctccaatgttagggac 564
Query: 121 tacatatgaatacatgtcagcatttgtgaggctgggaataaaatgttgatgccatttctg 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 563 tacatatgaatacatgtcagcatttgagaggctgggaataaaatgttgatgccatttctg 504
Query: 181 ttccttgagacaaaatgtctatcatttatcctgattaaaatctgtggcatggacagtcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttccttgagacaaaatgtctatcatttatcctgattaaaatctgtggcatggacagtcca 444
Query: 241 tacattataaaaataggttaaataatatgagaataaaccatatgaactcacaacttagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tacattataaaaataggttaaataatatgagaataaaccatatgaactcacaacttagaa 384
Query: 301 ataactatgattagaaaacaatatacatatattttacagcgttgttatgaaatttttaat 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 ataactatgattagaaaacaatatacatatattttacagtgttgttatgaaatttttaat 324
Query: 361 tattgatcatgtaacttaagttttcatttcctcttgccatgcaaggaaaattataagtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tattgatcatgtaacttaagttttcatttcctcttgccatgcaaggaaaattataagtac 264
Query: 421 attcaacagtgatattgtaatacacattgatagtataatttatataaatttaactttacc 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 attcaaaagtgatattgtaatacacattgatagtataatttatataaatttaattttacc 204
Query: 481 tga 483
|||
Sbjct: 203 tga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space: 413802
Effective search space used: 413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
