BAC Information

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BAC

Clone NameMSMg01-399C01
Chromosome8 (Build37)
Map Location 120,199,326 - 120,346,384
singlet/doubletdoublet
Overlap geneHsd17b2, Mphosph6
Upstream geneCdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399C01.T7 (MSMg01no399_c01.b1)MSMg01-399C01.TJ (MSMg01no399_c01.g1)
ACCAG499065AG499066
length718740
length of high quality
(start - end)		468 (51 - 518)196 (81 - 276)
definitionCHROMAT_FILE: MSMg01no399_c01.b1 PHD_FILE: MSMg01no399_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:03 2005CHROMAT_FILE: MSMg01no399_c01.g1 PHD_FILE: MSMg01no399_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,345,923 - 120,346,384)(120,199,326 - 120,199,521)
sequence
CCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCGTGTCATTCACTTAGTGCCAGCTCACAGCCTCTGGGATG
TCCAGCATTACCCATTTTGGCCCATTGGGCTATCCACATCAGTTCCATGT
TGTCTGAACATAAACTGATCTGTAGCGAGCCTTCTATCTCCAACCACTAA
CATCAGGAACTCTACCCAAGTGGACCTTCAGAGTGATGGCAGCCACAGAA
CAGTAGCTGAGTCAAGAGAGAAAGAAACTGGGGAAGACCTTCTAAAGTCA
CCGAAGCCTCCCTCTAGACTTGATAATTAACCAACTGCATTTACTTTAAA
AGGCTCTTATAAACTATAACCCTGGTGATTCACATGAATCAGTTAACAGC
TATGTCTAGTAATTATCTAGCAGAAAATTGAATATATGTTAACTATATGG
CAAATTAATTTGGGTTCCATTTAACACAACAGCGATCTCAATTCACATAT
GTTCGGTCTCCTTAACCTACGGCTGCTATGGCGTGATTCTGTGCCGAAGA
CCGTAGAGAAGCATAAAGCTAATTTTCAGACGTCTAAACTAAGTATGTCT
GTTAGGAAGACCCCAGTTCTTACGAGATGGCTATGTTGACGTAACCAAAG
CTCGCCGTCATTCCCTTTGCCCATTGACCAAATCTTCTATTCCCACTGAT
GGTACTTAGCTATCCTGT

TTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACAGGAGATTGTTTTCC
TGTGAGCAATCCCAGGATCCTCCAGGGGATGCCCACATTTCCTGTATGGA
TAAACACGGAGTGTGCTATATTAAATGTTAATATTATTTTGTCCCCTGAG
GACTCTTAGAATATAAACATTTACATCTGAAAGGAAAATTACAGACTTTG
TAATTACTCCCCGAGTTCTCACTGCCGGTTAGTACATTTTGCAAAAGCCC
AGATAGTAAATCTATGCTAACACTGACCTTATATTGAAATTCTCTTAACC
ATCGGTTTTCAGCCCATTATGTCCTTTATTTCCCATTTACGAGACAAATG
GTGCTGAATGCCTTTTTTTTTTCGTGACTTACCTCTCCCTTTTTTTATTT
TCTTACACTTCGGTATGATCTGCTTCTTAACCATCTATGACTTCTTTTCA
CTTATTACACCTATGACTATCCCTTTCCCCTGTATCTAAACACCGACCCC
TCATGTATCTTTTCCCCTCTTTACACTTTTTTCCTCCCCTTTTTTTTTTT
TTCTTCCCCCACTTCTTATTTTATTTTTTCTCTCTTTCCTTTCTTTCCCT
CCCTTTTTTTTCCCCCTTTTCTTTTTTTTTTTTTTTTCCCTCTTCCTACC
CCCCCTTTTCCCCCCTTATATTCTCCCCCTCCCCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_c01.b1 MSMg01no399_c01.b1 CHROMAT_FILE:
MSMg01no399_c01.b1 PHD_FILE: MSMg01no399_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:03 2005
         (468 letters)



>mm_chr8_120345720_120346587
          Length = 868

 Score =  870 bits (450), Expect = 0.0
 Identities = 459/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccgtgtcattcacttagtgccagctcacagcctctgggatgtccagcattaccc 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ggaattccgtgtcagccacttagtgccagctcacagcctctgggatgtccagcattaccc 606

                                                                       
Query: 64  attttggcccattgggctatccacatcagttccatgttgtctgaacataaactgatctgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 attttggcccattgggctatccacatcagttccatgttgtctgaacataaactgatctgt 546

                                                                       
Query: 124 agcgagccttctatctccaaccactaacatcaggaactctacccaagtggaccttcagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agcgagccttctatctccaaccactaacatcaggaactctacccaagtggaccttcagag 486

                                                                       
Query: 184 tgatggcagccacagaacagtagctgagtcaagagagaaagaaactggggaagaccttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgatggcagccacagaacagtagctgagtcaagagagaaagaaactggggaagaccttct 426

                                                                       
Query: 244 aaagtcaccgaagcctccctctagacttgataattaaccaactgcatttactttaaaagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaagtcaccgaagcctccctctagacttgataattaaccaactgcatttactttaaaagg 366

                                                                       
Query: 304 ctcttataaactataaccctggtgattcacatgaatcagttaacagctatgtctagtaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctcttataaactataaccctggtgattcacatgaatcagttaacagctatgtctagtaat 306

                                                                       
Query: 364 tatctagcagaaaattgaatatatgttaactatatggcaaattaatttgggttccattta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tatctagcagaaaattgaatatatgttaactatatggcaaattaatttgggttccattta 246

                                                     
Query: 424 acacaacagcgatctcaattcacatatgttcggtctccttaa 465
           ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 245 acacaacagtgatctcaattcacatatgttcggtctccttaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no399_c01.g1 MSMg01no399_c01.g1 CHROMAT_FILE:
MSMg01no399_c01.g1 PHD_FILE: MSMg01no399_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:04 2005
         (196 letters)



>mm_chr8_120199126_120199721
          Length = 596

 Score =  379 bits (196), Expect = e-110
 Identities = 196/196 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacaggagattgttttcctgtgagcaatcccaggatcctccaggggatgcccacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatacaggagattgttttcctgtgagcaatcccaggatcctccaggggatgcccacattt 260

                                                                       
Query: 61  cctgtatggataaacacggagtgtgctatattaaatgttaatattattttgtcccctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtatggataaacacggagtgtgctatattaaatgttaatattattttgtcccctgag 320

                                                                       
Query: 121 gactcttagaatataaacatttacatctgaaaggaaaattacagactttgtaattactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactcttagaatataaacatttacatctgaaaggaaaattacagactttgtaattactcc 380

                           
Query: 181 ccgagttctcactgcc 196
           ||||||||||||||||
Sbjct: 381 ccgagttctcactgcc 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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