BAC Information

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BAC

Clone NameMSMg01-399E23
Chromosome8 (Build37)
Map Location 37,303,007 - 37,303,132
singlet/doubletsinglet
Overlap geneLonrf1
Upstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e
Downstream geneEG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399E23.T7 (MSMg01no399_e23.b1)MSMg01-399E23.TJ (MSMg01no399_e23.g1)
ACCAG499203AG499204
length795852
length of high quality
(start - end)
129 (72 - 200)---
definitionCHROMAT_FILE: MSMg01no399_e23.b1 PHD_FILE: MSMg01no399_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:17 2005CHROMAT_FILE: MSMg01no399_e23.g1 PHD_FILE: MSMg01no399_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCCGAGGTCCGCG
GAATTCAAGGTTAGTTTCAATGATACAGTAAGAACCTCCCTCCATATCAT
CTTTAAGTGAGCATCTATACCATCAAAAAGCAAAATCGACATACTGTCTG
CAAGCTCCATCCTGGGGGGGGGGGAGGGGCAGGTTGGGGTAGAGGTGNNC
GNGANNNNNGNGNNACNCTCCGGGNNTCCNNGTGACTAGTGATTGATTAT
CTTTTCTTTCTCCCCAAAGTATTGAGAGTTAACACACGTACATACCCTAG
AAGCTACCCCCCTTCATACTTTTTTTTTTTTTTGTCCCCCTGTTTCCCTT
CCTCTACATTGCCCGCCCTTCATAGGCCATGCCCCTTCGTTTATATTTCC
TGTTCATCTTGCCTGTTATATTTTTCCCTCCTCTTCCCCTTTTACTCCTT
TGCTCTTGTTTTCTATGCCAACCACGAAATTCTCTTCCTGTTTTCCCCCC
CCCTTCCCCTTCCTTCTTTTTTCCCTCATTTTTACCTGCCCCTCTTTACG
CTTCGCCCTCTACTTTTATCCTCCTTCTTTTTTCCCCCTTCCTTTTTTCT
TCTCCCTCGTCCTTTAAGTTCCCTCCTCTTACCCCTCTCCTGTTTCCCTT
TTGTTTCCGCTCCTCGTTCCCTTTTTCGACTACCCTTTTTCTTTTCGCCT
TATCCCTCCTTCTCCCCTTTACGCTCCCCCATTTCCCCTCTTTGCCCCTC
TTTGTTCCCCTCCCCCCCCCATTCTTTACTCTTTCTATCTCTTTN
CTTTCGCCTTTTTCTCTCTTCCCTCTTTCCCTCTTCTTTTTCCTCACTTC
TTTTTTTTTCCTCCCACACTCCCGCCTTCCTCCTCCTCTTTTTTTCCCTC
TCTNCTTTTTCCTTTTTCTCCGTATGATAGTGGTTAAGTCCTGGCTGGCC
GTCTGGTTTCCCGACATTTAAGGTGACTTTATATAAAGGTTCCCGCTGAA
ATTTATTGGAATGTTTTACTGGCATCTCTTTACTTAATTCCCCTAGAATT
CCCATAAGGCCTTTTACACCAAATTTTTTTGTGTTCCCTTTGGGAAGGGC
GTATCAAAAAAAAAAAGTGGGGTGTTCCCCCCCTTTTCTTTTCCTTTTAT
CTCCCCTCCTCTTCTCCCTCCTTTTTTTTTCCCCTTTTTTTTTTCTTTTT
TTTTCCCATCTTTAATCTTCCCCTTTCCACTCCCCTTCTTATTATTTTTT
ATTTAGTTCCTCTCCCCTTCCCCCCTCATTCTCTTATTCCTTAACCCTTT
GGTGTTCTCCTTCACCTTCCTTACCACCTTGTTTTCTCTTCTCTCCCCCA
GTTTCTCTCACTATTTTCTCTTCCCCTTTTCCCCTTTATTTACTATTACA
CCCCCACCCCCACACCATGTTTCACTTTCTCCCTCCTCTTTCCTTCCTTT
CTTTTAACTCCCCCTTCTTATTTTATTTTTAACTACCCGCCCTCACCATA
TATTTATTTATTATAAGCCCTTTTTTTCCTTTTCTTTTCCGCTCGCCTCA
TTCTTTCCCCCCTTTTATCCTTTATATTCCTTTATATTANCGCGTGTGCC
CACCCCTGCCGTATTTATCCTCCCTCTTTTTTCTCCTCCTCCCCCCCATC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_e23.b1 MSMg01no399_e23.b1 CHROMAT_FILE:
MSMg01no399_e23.b1 PHD_FILE: MSMg01no399_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:17 2005
         (129 letters)



>mm_chr8_37302807_37303335
          Length = 529

 Score =  244 bits (126), Expect = 2e-69
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatacagtaagaacctccctccatatcatctttaagtgagcatctataccatcaaaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatacagtaagaacctccctccatatcatctttaagtgagcatctataccatcaaaaagc 260

                                                                       
Query: 61  aaaatcgacatactgtctgcaagctccatcctgggggggggggaggggcaggttggggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatcgacatactgtctgcaagctccatcctgggggggggggaggggcaggttggggta 320

                 
Query: 121 gaggtg 126
           ||||||
Sbjct: 321 gaggtg 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)