BAC Information

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BAC

Clone NameMSMg01-399K08
Chromosome8 (Build37)
Map Location 83,446,554 - 83,446,801
singlet/doubletsinglet
Overlap genenone
Upstream geneHhip, LOC546075, Gypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496
Downstream geneLOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399K08.T7 (MSMg01no399_k08.b1)MSMg01-399K08.TJ (MSMg01no399_k08.g1)
ACCAG499459AG499460
length738760
length of high quality
(start - end)
248 (71 - 318)74 (85 - 158)
definitionCHROMAT_FILE: MSMg01no399_k08.b1 PHD_FILE: MSMg01no399_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:43 2005CHROMAT_FILE: MSMg01no399_k08.g1 PHD_FILE: MSMg01no399_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGCGG
AATTCTGGAATTTTGCATCACATTGAAGAATGGGGCATGGGGGAAGGGCA
TTAGTGATAGGATCCTCTACTGAGCCTCATCACCCGCCCTCCCACACTCC
CCACCTCCTCCCTCCCTTCCCCCAACCCAGCTCTGGAGCTGACTGCATCT
CTCAGGGGATCTTAGAGCTGCATGAGAAGAAATGGCCTTTGGTATGCTGC
CAACTAGAGCGCAGCCTTTCCAGAGCTGTCCCAAGCCCAAGGCGTTTCCC
GGGAACTGGACCAGCTGTCAGTATAACAGGTCCGGCTTCTTTGGGCTTGG
CAAATTTCCTTGGCCTTTCCCAAGAATCCTGCCTGGCTCTTGCCAGACCT
GATGTGGTTCCCGGTCCCCCCCCGCAGTTTCTGTTCATTACTCTCTGCAT
CTTGGAGCAAGAAACTCATCACATTGCTGGTATTTCCCCCTAAAGGCTCC
CAGCTTTTACCACTCTGCGTCCCAATCTCTAAAACGCTATGTATTACTAT
CGCTTCACTCCTGCCTTTGTATAAGTTTTCTATATTTGCCCGCCCCTTTG
ATTTTTCCATGATTCCTCCATTTTCATTCATCCAACCCCTCTTTTCCCAT
CCACACCCTTAGTTTGTTATGGTTTAACACCTTCTCTCTAAAACCCCCCC
AATCCCATGCTGTAGCTTCCTGGTGTTAACAAAATTTT
CCCGATGAAGTGTGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGTGCTGCAGCCCCGAAGTCCTTTT
CTCCCTGTGAGCACTTCCAGAACTTCTCCTTTCTACAAAAGCTATGCAGG
CTTTGCAGACCGGCCCCTAAATAACTTTTATTTTTTATCGCCAACCTGAA
TGGCATTTCTAGACAGTGTTTGTTGCCGTGACACAGGAATAACCCTCTTA
CCCATTACGTCACCCCATAACTTCACGGTTTACAATAGTAATTTCACAAC
ACCGCGTACTTCCTTCCGCTGCTTTACTGCCCCTGATTCTTACCTTACGC
ATCCTCCTGGCCTTCATTCTCACCCGACTCCTCTTCACTTTTCTTTCTGC
CCTACACCGCCCTTCTTCCCTCCCCCCTTCTTTGTTTTTTACTTAGAGGA
ACAAAATTTACCTGTCCCCTTACCTGAATACATTTTTCCATTTCCCCCCT
CCTTTTTCCTCATTTCGCTTCTCCCCACCCCTTCTTTTTTTTATTTCCCC
CCCTTTTCTTTATCCTTCCCCCCCCCTTTCCTTTTCCATTTAAACCCCCC
CCCCATTCCTTTTTTTTATTTTTCCCCCCCTTTTCCTTTACCTTTTCCCT
CCCCGCCCTTTTTCCCCCACCCATTTACACACTTTAACCTCCTCCCCCCC
TCTTCTAACGCCCCCTTATCTTTACTCTGCACCTACTTTTACTATTTTCC
CCCCCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_k08.b1 MSMg01no399_k08.b1 CHROMAT_FILE:
MSMg01no399_k08.b1 PHD_FILE: MSMg01no399_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:43 2005
         (248 letters)



>mm_chr8_83446354_83447001
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgaagaatggggcatgggggaagggcattagtgataggatcctctactgagcctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgaagaatggggcatgggggaagggcattagtgataggatcctctactgagcctcat 260

                                                                       
Query: 61  cacccgccctcccacactccccacctcctccctcccttcccccaacccagctctggagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacccgccctcccacactccccacctcctccctcccttcccccaacccagctctggagct 320

                                                                       
Query: 121 gactgcatctctcaggggatcttagagctgcatgagaagaaatggcctttggtatgctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgcatctctcaggggatcttagagctgcatgagaagaaatggcctttggtatgctgc 380

                                                                       
Query: 181 caactagagcgcagcctttccagagctgtcccaagcccaaggcgtttcccgggaactgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactagagcgcagcctttccagagctgtcccaagcccaaggcgtttcccgggaactgga 440

                   
Query: 241 ccagctgt 248
           ||||||||
Sbjct: 441 ccagctgt 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)