Query= MSMg01no399_p05.b1 MSMg01no399_p05.b1 CHROMAT_FILE:
MSMg01no399_p05.b1 PHD_FILE: MSMg01no399_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:05 2005
(258 letters)
>mm_chr8_112281246_112281904
Length = 659
Score = 383 bits (198), Expect = e-111
Identities = 235/254 (92%), Gaps = 14/254 (5%)
Strand = Plus / Minus
Query: 7 gaattcttttattc-taaatccatatgtaaatatctcatggcgtgaatacatgttttcta 65
||||||||||| | ||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct: 338 gaattcttttaaacataaatccatatgtaactatctcgtggcgtgagtacatgttttcta 279
Query: 66 tacacacatgtgtaatcatgtgtgcatatatatttttatatatgctgaaggaataggtat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tacacacatgtgtaatcatgtgtgcatatatatttttatatatgctgaaggaataggtat 219
Query: 126 tgcatttatgttctttctcccttccttccttccttctttccttccttccttccttccttc 185
||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 218 tgcatttatgttctttctc----ccttccttccttct--------ttccttccttccttc 171
Query: 186 cttccttccttccttccttccttccttccttccttccttcctttttaattttttga-aca 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 170 cttccttccttccttccttccttccttccttccttccttcctttttaattttttgagaca 111
Query: 245 gattttctctgtgt 258
||||||||||||||
Sbjct: 110 gattttctctgtgt 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 659
Length adjustment: 9
Effective length of query: 249
Effective length of database: 650
Effective search space: 161850
Effective search space used: 161850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no399_p05.g1 MSMg01no399_p05.g1 CHROMAT_FILE:
MSMg01no399_p05.g1 PHD_FILE: MSMg01no399_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:05 2005
(538 letters)
>mm_chr8_112271711_112272652
Length = 942
Score = 971 bits (502), Expect = 0.0
Identities = 532/542 (98%), Gaps = 4/542 (0%)
Strand = Plus / Plus
Query: 1 ctttgtagtgtgaagttggaattcttatgatgggagagtcggagctctgtaaa-gtaaac 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ctttgtagtgtgaagttggaattcttatgatgggagagtcggagctctgtaaaagtaaac 260
Query: 60 aagac-aaaaccctgcaatgctggttattcgtctcctaagacaacaggaatctgaaatcc 118
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagacgaaaaccctgcaatgctggttattcgtctcctaagacaacaggaatctgaaatcc 320
Query: 119 acactggtcacctagttcctctctgatctctgtgcacctgcagcagtcagaggaagctca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactggtcacctagttcctctctgatctctgtgcacctgcagcagtcagaggaagctca 380
Query: 179 gaaaacttccccaaatctgcctgacattagaactatcgagagcactgctaacttgggaaa 238
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gaaaacttccccaaatctgcctgacattagaaccatcgagagcactgctaacttgggaaa 440
Query: 239 acagccacatcatagcaaaaggccttatatgcttccttctgcatgtgctgtctcatcctc 298
||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||
Sbjct: 441 acagccacatcatagcaaaaggctttagatgctcccttctgcatgcgctgtctcatcctc 500
Query: 299 ctttctctgggtctcaggatgtaaagtgtcattttgggaaaggaactggttggacaccag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttctctgggtctcaggatgtaaagtgtcattttgggaaaggaactggttggacaccag 560
Query: 359 taacagaaacaactaatcacagacccactctgagatgtctagtgggcatttgtgcctggc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taacagaaacaactaatcacagacccactctgagatgtctagtgggcatttgtgcctggc 620
Query: 419 attacactgttggttttctccaaagcttttctcattgcccgggtgcatatatatata-c- 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 621 attacactgttggttttctccaaagcttttttcattgcccgggtgcatatatatatatct 680
Query: 477 cctgcaagttctgtcttatctacttctctatgaaacatcctctccttgtgcttttaaagg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgcaagttctgtcttatctacttctctatgaaacatcctctccttgtgcttttaaagg 740
Query: 537 tc 538
||
Sbjct: 741 tc 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 942
Length adjustment: 10
Effective length of query: 528
Effective length of database: 932
Effective search space: 492096
Effective search space used: 492096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
