BAC Information

Click to search

BAC

Clone NameMSMg01-401J03
Chromosome8 (Build37)
Map Location 84,603,640 - 84,762,481
singlet/doubletdoublet
Overlap geneInpp4b, LOC671182
Upstream geneLOC236010, LOC384852
Downstream geneIl15, EG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401J03.T7 (MSMg01no401_j03.b1)MSMg01-401J03.TJ (MSMg01no401_j03.g1)
ACCAG500924AG500925
length755755
length of high quality
(start - end)
318 (331 - 648)299 (329 - 627)
definitionCHROMAT_FILE: MSMg01no401_j03.b1 PHD_FILE: MSMg01no401_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:13 2005CHROMAT_FILE: MSMg01no401_j03.g1 PHD_FILE: MSMg01no401_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,762,164 - 84,762,481)(84,603,640 - 84,603,938)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAAGGATG
CGCGGAATTCTGGGCTTACTTCAATCAAGCAGGAGCTTGAAGCAGAAACC
ATGGAGGAATTATGCTTGTTGGCTTGCTCTGAGGATCACTCTTATCTTTC
TTAAGACAGTTCTGGACCACCTGCTCAGGGATGCTATCACACACAGTCAG
CCTTGTCAATTACATCACTTATCAATCAAGACAATCTCTCACAGACATGT
CCTCTTATCTATATGATATGTTCAATGGCTCAGTAGAGACAGACTCCATT
CTAAGTGACTCTTGGCTGTGTCATGGTTATAGTTAAAGCTAACTGAGACA
TTGTGCACAGCCAGATAACTTGACTGTGACGCATCAATCGATTGAGTAAA
AACTAGGTAAAAGTCATGAGGAGATATTTCATCCAGCAGTACAGATAGGT
AAAGAAGACATGAAAAAGTCTTCAGGACCATGCACGACAAACACAAGCTA
ACAAAATTCAAATAAAACCATGCTGAGACGTCACTAAATGCCCACAACTG
GCTGAAATAAGGAGCAGGGACTACACCAACCACTTGTGATGTAAAGATCC
TGGGGCACTTCTGCATTCTGAGCATTATAATGTCACAGTAACTCTGTAAA
AACAATTTGTCAGTCTCTTAAAAATACAACATATTGCACAAAGCAGGGTT
AATGGGTCCGCACTTAAGAGCTCATACTTCATTTCCAGGTTACCAACTGT
TCATT
NCCCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTACAAAAAAATTCACATGAGCAAGGATGACATCATT
ATAGGGAATCAAGAATATAATTTATAAAGCATATCATTTGCAAAATTGTT
AGTTTGTTAGCTGTAACAAATCACATGTCATCCCTTCAGCACTGCAGCAT
TGCTTGCTGGGGATCACTGCTCAAAGTGCAGACACTCAAAATGAAGAGCA
TTTTTTGCTGGGGATCACTGCTCAAAATACAGACACTCAGAATGAAGCTA
GGGCTGCAGAGAACAGTGATTTTCTATATGGCACATAAAGTAAGCACAGA
ACAGAGAGGGGAAGGGCGATGTTTGAAGTTAAATTTCCCATCTCTAAAGA
AGGGGATTCTAATTCTAAAGACTCTTATACACTTACCTGTAAAGAGAAAC
ATACACACATGCATGCATACACACAAGCACGTGTGAATGCATGCACAGAG
GGTCTGGTAAATATATTATAAAGTTGAACTGTTTAATGTGGTAACTTCCC
AGCTTCCTCATCTCAGCATCCAGCATCCTCATGAACACATAATAAAATAA
ACAGCTCTGAAGCACTTAACATAGTCCTAGTTACAGTGAGCATCAGGAAC
AGAAAAGGCTGCTATGGCTGTCACTGGTGCTGTGTAGAAATGGTTTCCGA
TTGTCCGCTGCTGTTGGTGAAGAAGATGTTGTTGCTTTCTTGTGCTGCAC
CTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_j03.b1 MSMg01no401_j03.b1 CHROMAT_FILE:
MSMg01no401_j03.b1 PHD_FILE: MSMg01no401_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:13 2005
         (318 letters)



>mm_chr8_84761964_84762681
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttaaagctaactgagacattgtgcacagccagataacttgactgtgacgcatcaatcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agttaaagctaactgagacattgtgcacagccagataacttgactgtgacgcatcaatcg 459

                                                                       
Query: 61  attgagtaaaaactaggtaaaagtcatgaggagatatttcatccagcagtacagataggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 attgagtaaaaactaggtaaaagtcatgaggagatatttcatccagcagtacagataggt 399

                                                                       
Query: 121 aaagaagacatgaaaaagtcttcaggaccatgcacgacaaacacaagctaacaaaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaagaagacatgaaaaagtcttcaggaccatgcacgacaaacacaagctaacaaaattca 339

                                                                       
Query: 181 aataaaaccatgctgagacgtcactaaatgcccacaactggctgaaataaggagcaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aataaaaccatgctgagacgtcactaaatgcccacaactggctgaaataaggagcaggga 279

                                                                       
Query: 241 ctacaccaaccacttgtgatgtaaagatcctggggcacttctgcattctgagcattataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 278 ctacaccaaccacttgtgatgtaaagatcctggggcacttctgcattctgagcattaaaa 219

                             
Query: 301 tgtcacagtaactctgta 318
           ||||||||||||||||||
Sbjct: 218 tgtcacagtaactctgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no401_j03.g1 MSMg01no401_j03.g1 CHROMAT_FILE:
MSMg01no401_j03.g1 PHD_FILE: MSMg01no401_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:14 2005
         (299 letters)



>mm_chr8_84603440_84604138
          Length = 699

 Score =  578 bits (299), Expect = e-169
 Identities = 299/299 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcacataaagtaagcacagaacagagaggggaagggcgatgtttgaagttaaatttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcacataaagtaagcacagaacagagaggggaagggcgatgtttgaagttaaatttcc 260

                                                                       
Query: 61  catctctaaagaaggggattctaattctaaagactcttatacacttacctgtaaagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctctaaagaaggggattctaattctaaagactcttatacacttacctgtaaagagaa 320

                                                                       
Query: 121 acatacacacatgcatgcatacacacaagcacgtgtgaatgcatgcacagagggtctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatacacacatgcatgcatacacacaagcacgtgtgaatgcatgcacagagggtctggt 380

                                                                       
Query: 181 aaatatattataaagttgaactgtttaatgtggtaacttcccagcttcctcatctcagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatatattataaagttgaactgtttaatgtggtaacttcccagcttcctcatctcagca 440

                                                                      
Query: 241 tccagcatcctcatgaacacataataaaataaacagctctgaagcacttaacatagtcc 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagcatcctcatgaacacataataaaataaacagctctgaagcacttaacatagtcc 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)