BAC Information

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BAC

Clone NameMSMg01-401L11
Chromosome8 (Build37)
Map Location 100,926,265 - 100,926,444
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401L11.T7 (MSMg01no401_l11.b1)MSMg01-401L11.TJ (MSMg01no401_l11.g1)
ACCAG501034AG501035
length755756
length of high quality
(start - end)
248 (329 - 576)240 (81 - 320)
definitionCHROMAT_FILE: MSMg01no401_l11.b1 PHD_FILE: MSMg01no401_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:24 2005CHROMAT_FILE: MSMg01no401_l11.g1 PHD_FILE: MSMg01no401_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCATAATTTGCGGCGCTAAACGAAACACTATTTCGATACTACCGNGG
NAATCNCAAATGTAACAAAAACCTGGCATTCATTAGAAACATTTCATACA
ATTCAACTTATTTTTATTATTTCTGTACTCTCAAAAGTATTTATGCCAAC
ACTGAAAGGGAAAAAGATGAAAGTATGATATACACTTTGAAATAACTGAA
AATATTATTTGAATAGTAATTTTAAAGTGAAAATAATATAGTTGTTATAT
AATATAATTGCAAAATACCTTATAATAGTTTTCATTTTTTAAAAAAATTA
CTACATATTAATCATCATGANCTTATAAAAAACAAAGGTGAGTAGGACAA
ATCAGAAGGTAAAGAAATGTTAGGCTTCCAAGTCAAATGACCTGCGTTTG
ACCCGCAGATACTACATGGTTGAAGGTGGAGGACTAATTTCTGTAAGCTG
TTCTTTAACCTACACACGTATGTAGAAAATAAATAAATGTAATTTAAAAA
TGAAGTCAATGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCC
AAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGCTGGNTCTTCCTCCCCC
TTCTTCCCCCTCTCTTCTTTCCCTCCTCTTCCCGTCCCCTCTTTTTCCCT
TCTTTTTTTTTTTTTTTTTTTCTTCCCTCTCCCTCTCCTTTTTTCCCCTT
TCTCCTTCCTTTCTTCCCTTCCTCGCCTTTTTTCCCTTTCTCTCGTTTTT
CCTTN
CTCGCCATGACATTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGCGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGCGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCTGTCTGGCGGTTCCTCTTTTTATTGGACATAGTACTACCGGAG
GATCCAGCAATACCACTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATATATAATAT
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGTTACATCTACACAATGGAGTACTACTCAGCTATTACACAGAA
TGAATTTATGAAATTCCTAGCCAAATGCATGCACCTGGAGGTCATCCACC
TGAGCGAGGTTACACTTTCACCATGGAATTCACTTAATATGTATTTTTTT
GAATAAGTGGATATTTATTCCATAACCTTACGATTACCCTCCATATAAGG
ATATAATTTTCCCTAAAACCCCCTGATACTCCCTTAATATACCTTCGACT
CGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_l11.b1 MSMg01no401_l11.b1 CHROMAT_FILE:
MSMg01no401_l11.b1 PHD_FILE: MSMg01no401_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:24 2005
         (248 letters)



>mm_chr8_100926064_100926711
          Length = 648

 Score =  335 bits (173), Expect = 2e-96
 Identities = 179/181 (98%), Gaps = 1/181 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacaaaggtgagtaggacaaatcagaaggtaaagaaatgttaggcttccaagtcaaat 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaaa-aaaggtgagtaggacaaatcagaaggtaaagaaatgttaggcttccaagtcaaat 260

                                                                       
Query: 61  gacctgcgtttgacccgcagatactacatggttgaaggtggaggactaatttctgtaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacctgcgtttgacccgcagatactacatggttgaaggtggaggactaatttctgtaagc 320

                                                                       
Query: 121 tgttctttaacctacacacgtatgtagaaaataaataaatgtaatttaaaaatgaagtca 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttctttaacctacatacgtatgtagaaaataaataaatgtaatttaaaaatgaagtca 380

            
Query: 181 a 181
           |
Sbjct: 381 a 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)