BAC Information

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BAC

Clone NameMSMg01-401M02
Chromosome8 (Build37)
Map Location 29,281,877 - 29,282,066
singlet/doubletsinglet
Overlap genenone
Upstream geneRab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698, EG666422
Downstream geneLOC666430, EG666446, LOC100042598, Unc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401M02.T7 (MSMg01no401_m02.b1)MSMg01-401M02.TJ (MSMg01no401_m02.g1)
ACCAG501064AG501065
length752761
length of high quality
(start - end)
327 (333 - 659)190 (81 - 270)
definitionCHROMAT_FILE: MSMg01no401_m02.b1 PHD_FILE: MSMg01no401_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:27 2005CHROMAT_FILE: MSMg01no401_m02.g1 PHD_FILE: MSMg01no401_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAGAGGAG
CCGCGGAATTCAAGGCCTTTCCATAAACATAATAAAAGCAATCCACAGCA
AACCCATAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCA
CTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTATACAA
CATTGTACTTGAAGTCCTAGCTAGAGCAATTCGACAACAAAAGGACATCA
AGGGGATACTTATTGGAAAAGGAGAAGTAAAAATATCACTTTTTGCAGAT
GATATGATAGTATATATAAGTGATTCATAATTTCCAACAGAGAACTCGTA
AACCTGATAAACAGCTTCGGTGAAGTAGCTGGGTATAAAATTAATTCAAA
CAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAA
TTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTT
GGTGTGACTCTAACTAAGGAAGTAAAAGATCTGTATGATAAGAACTTCAA
GTCTCTGAAGAAAGAAATTAAAGATCTCAGAAGATGGAAAGATCTCCCAT
GCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTACCTTGCCAAAA
GCAATCCATTAGATTCTTTGCTATCCCCATCACACTTTCAACTCCATTCT
TCAATGAATTTGAATGAACAAATCTGCTATTTTTCTTGCAATAACCATAA
CN
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAATACTTCCAAGGCCAT
TAAAACTATTTAAAATGACTACGGAATGAAGGTGGGAGGGTGGGGGTGGG
GCAAGCATACAGAGCATCCCTGTTATTTGTGACTAGATTAATGAAATTCT
GAAGAATTACAGAATCTTTCCAAGGCAGTCAAGTCCAGCTGGGTTTTACT
TTGCTTTTTTATTGACATTAGCATGGACTATAATACATTCTTAATAAACC
ACTCTTCCATATTCTCTTTGTTTTTTTAATTATTTCAAATTGCATTTTCA
AGCCTTGAGTTTATCCATATCCCCCCCCCACCCTGGAAGATGGCCAAAGT
TTTAGTTTACCAACACCTAAAGGTTTCACAGGATGACTTGATAAACCGCA
GGAAGGTGACTACACTCTGCCCCCGACTCCCCAGCGCTTCTCAGGTGCAA
CTTTGAATGCCATCTTCGCACCACCCGACCGACCACCGCCCCCTACCCTT
ACACGATCTCTCCCCCTTTTTCTAGCTTATCGCTTTCCCTTATGTTGACG
CTGTTGTCTAACTGTAACTGCCCCCCCATGCCCCCTTGTTGCCCTTTCCC
CCCGCCTTTTCCTTCTCCCCCCCCACCACTCCCTCCCCCCTCTTCTCACC
TCCCCTCCTCCTCCCCCCCCCCTCCACCCCTTTTTTCTCCCTCGCCCTCT
CTATCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_m02.g1 MSMg01no401_m02.g1 CHROMAT_FILE:
MSMg01no401_m02.g1 PHD_FILE: MSMg01no401_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:27 2005
         (190 letters)



>mm_chr8_29281677_29282266
          Length = 590

 Score =  337 bits (174), Expect = 3e-97
 Identities = 186/190 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaatacttccaaggccattaaaactatttaaaatgactacggaatgaaggtgggaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atgaatacttccaaggccattaaaactatttaaaatgactacggaatgaaggtgggaggg 331

                                                                       
Query: 61  tgggggtggggcaagcatacagagcatccctgttatttgtgactagattaatgaaattct 120
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 330 tgggggtggggcaagcatacagagaagccctgttatttgtgactagattaatgaaattct 271

                                                                       
Query: 121 gaagaattacagaatctttccaaggcagtcaagtccagctgggttttactttgctttttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 270 gaagaattacagaatctttccaaggcagtcaagtccagctgggttttactttgcatttat 211

                     
Query: 181 attgacatta 190
           ||||||||||
Sbjct: 210 attgacatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)