BAC Information

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BAC

Clone NameMSMg01-403A13
Chromosome8 (Build37)
Map Location 120,335,497 - 120,335,860
singlet/doubletsinglet
Overlap genenone
Upstream gene2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403A13.T7 (MSMg01no403_a13.b1)MSMg01-403A13.TJ (MSMg01no403_a13.g1)
ACCAG502040AG502041
length972748
length of high quality
(start - end)
---364 (66 - 429)
definitionCHROMAT_FILE: MSMg01no403_a13.b1 PHD_FILE: MSMg01no403_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:10 2005CHROMAT_FILE: MSMg01no403_a13.g1 PHD_FILE: MSMg01no403_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATTTCACTCAAACAAAAAGTTTTCCCACAAAGGACGCGCCAAANCAA
CTTTTTCTACGAAACACGGCGCAACAAACCCGCAGCCCATGATAATCGTG
CACCTAACTCTTTCTGTCGTCATCCATCGTCTCCCTAAGATGACCCCCCC
ACATCATCTATTTCCCCCCACCATTTATATACGCACCGGACCGCTATTCA
ATACTCCCACACGCTGACTTTATTTACCCCCTTATTTACTATCCCACGCC
GCTACGTTCCGTTACTTATTGTTGTTCGAACAGACTTGCCCCCCGACTAT
TTTTCACCGTGTTTGTTGCCGACACAGCTGCCGCCGCCGTTATTTTTTTT
CTCTGTTTCTCCACACGCATGACTAGTATTAGATTAGCACGGACGCGCTC
ACGATCCGACTAGATAACACACGACACGATCAGTATCCCACCCCCACCTC
ATTTTCCCCTATATGCCCCCCACCCGACATAACCATTATCTCTTCATTTT
TTTGCTTTAAGTCCCTTTCCCCCCTCGTTCCAGCTACCCGTAATTTTCTT
GTATTATGTTCGATGATTTTCCCCGCCATATCTATATGGCTATGCCCCAC
CCACTCATTTTCATCATGCGATTCCCCCCTTTNCACCCTTTTGCATCTTA
TGCCACGCCCCGTCCCCATTCATCCACTTTACCGCCTTCTACCGCACGAT
TTTTATGTTCCCATTATCCCTGTTTCTTTTTCTTCCTTCCAACTCTTGTA
TTTAACATTGCGCTCTTATTGACACCANGTAATACGACACCGTCTTGATC
ATCGCTTTCTCGCCAGTTCTTAAACCTCCGCTCCTTAATTCTTCTCGCTT
GGCACCCGTTTTGCAATATCACTCCCACTACAAATATTCCCCTCCGCCGT
TCTTATAACCCCTTACGTGATATATCGCTGACTTATTACACGATCACCCA
CGATCTGTGGGTCATTATACTG
GAATCTGTGAGCCCTGGGGGCCGCCCTTCCAACAACTTTAGGNGAACTAT
AGTTGCCTCCACGAAATTCTCTTCCCTCTGTGAAGATCATGTGAAACAGT
ACACACAAGCCCGTGTCACCGGAAGTACACAGCTCTGCAGATGTGGAGGA
AGGCCACTACTGCCCAGAGGGGGTTGCTTTATGGCCACTTTCATTGGCAT
GGTTGATTTTAAGTGGCATAGTATGAACTATTCATACTATGTATGCATGA
ACGAACTACCATAGATGCGGAGGTGTAAAACCTGGTATACATCTTCATTC
TCCTTATTTCTACTCGAAGGCAATTCTAAGATCTTATTGTTCTGCTGGCT
TGGCAGGAATTAAATGTAAACACTTGTCAGTACTTTCCTGTTCCAAACAT
GGTACGGTGGTGACAGACTTTGGGGGTGTAGGTGAAGCGCATGTGATCAC
TGGTGTACTGGCTAGTTTTGTGTCACCTTGACACAGCTGGCGCTATTACA
CAGAAAGGAGCTTCAGCCGAGGAAATGCCTCCATGAGATCCAACTGTAAG
GCATTTTCTCAATTAATGATCAATGCGGAAAGGCCCCTTGTGTGCGGGAC
CATCCCTGGGCTGGCACCCCTGGCCTCTACAATAGACTATTGTTGACTTA
GCCCTGGGCAGGCTATGCCTTTCTATTACCCCTTCCCCCTGCCCCTCCGC
TTTTTCCCCCCTTGTTTCCTCGTTTCGCTTCGATTTCTCAGTCCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_a13.g1 MSMg01no403_a13.g1 CHROMAT_FILE:
MSMg01no403_a13.g1 PHD_FILE: MSMg01no403_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:10 2005
         (364 letters)



>mm_chr8_120335297_120336060
          Length = 764

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcttccctctgtgaagatcatgtgaaacagtacacacaagcccgtgtcaccggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctcttccctctgtgaagatcatgtgaaacagtacacacaagcccgtgtcaccggaag 260

                                                                       
Query: 61  tacacagctctgcagatgtggaggaaggccactactgcccagagggggttgctttatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacagctctgcagatgtggaggaaggccactactgcccagagggggttgctttatggc 320

                                                                       
Query: 121 cactttcattggcatggttgattttaagtggcatagtatgaactattcatactatgtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactttcattggcatggttgattttaagtggcatagtatgaactattcatactatgtatg 380

                                                                       
Query: 181 catgaacgaactaccatagatgcggaggtgtaaaacctggtatacatcttcattctcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgaacgaactaccatagatgcggaggtgtaaaacctggtatacatcttcattctcctt 440

                                                                       
Query: 241 atttctactcgaaggcaattctaagatcttattgttctgctggcttggcaggaattaaat 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatctactcgaaggcaattctaagatcttattgttctgctggcttggcaggaattaaat 500

                                                                       
Query: 301 gtaaacacttgtcagtactttcctgttccaaacatggtacggtggtgacagactttgggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaaacacttgtcagtactttcctgttccaaacatggtacggtggtgacagactttgggg 560

               
Query: 361 gtgt 364
           ||||
Sbjct: 561 gtgt 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)