BAC Information

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BAC

Clone NameMSMg01-403I17
Chromosome8 (Build37)
Map Location 41,403,394 - 41,558,500
singlet/doubletdoublet
Overlap gene2900075B16Rik, Zdhhc2
Upstream geneEG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20
Downstream geneCnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403I17.T7 (MSMg01no403_i17.b1)MSMg01-403I17.TJ (MSMg01no403_i17.g1)
ACCAG502430AG502431
length776773
length of high quality
(start - end)		470 (34 - 503)331 (68 - 398)
definitionCHROMAT_FILE: MSMg01no403_i17.b1 PHD_FILE: MSMg01no403_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:52 2005CHROMAT_FILE: MSMg01no403_i17.g1 PHD_FILE: MSMg01no403_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,558,037 - 41,558,500)(41,403,394 - 41,403,724)
sequence
GTGGTCGCTAAACGACTCACTATTTCGAGAGGATCCGCGGAATTCTGTTT
GTCCCCAGTCTCGTTCAACAATAAGATATGAAATTGTGTAACAGACTTTT
CCCTCCGCCTTCACCTGTGAAAAACAGAGGCTAGTAAAAGAAAAGCGGGT
GCACTCTCACCGGCTTTGCCCTTCCCAGGGTTTGCGCTGCTCTCTGTCCA
GGTCTGAGAATCCTTAAGGAGATGGCTCTGGGACTCTCTCAGAGGCTTTG
CAGGAAACTGGTGGTTTTCAGGACTGACAAAAAAATAATCAGAAGCCCAA
GTCAACTCTTAATAGCACAGCTGAATATTTCTCAAAAAAAATGAAATGCA
GACCTCTCGCAATGCAAGGCGCTCTTGGGAAAGACCCATGACAACCAAGG
ACTACAAGGAAAATACATAAAACCAGGTTCTCTACTAGAGAACCATTCTG
TTTTGTCTTCTTGCATTCCAGGTTATGCTAAAGTGACAGTCCCCAACTCC
GAGAAATGTCGATTTGGCATACAGAAAATGTTCTGAGGGTCCAATAACAC
TATATTCTGTTTAGCATGCCAGACAATTTAACAAGCATGCAATAACATTT
ATTTGATGACAGTTTAATAAGTTTTATTTATGCCACGTGATCCTAGCTTC
TCACGAAAATGGGTTTGAAAAAAGATTGAAGGCCATGAAATTGGGCTCTC
CTTGTTTTCCAGGATGGTGGTCCCGAGTTTACCCCTCAAACTCCCTAATT
GTCGGGTGGGCGTGGCCATCCGAATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCCTGTGGCATTAGTGAGAAAAGATCCCAGTT
CTTATATTTACACTGCTGACATTTATTAATACTTGAGTTAGAGCTACTCT
AGCTATAGGGCGATGCAAGGTACTTACAGAATCCTTCACCTTGTCTTGTT
ATTAGATGTCAGTAAGCTTTGAGGCTGTTACTAGACAAGCAATGTGCTTG
AACATTGGAGTTATTTCTGATGAGACGTGGAGTGGTGAGGAAGGTCATGA
GTTGTATATGTAAGTCCTCTTTAACAGTTGAGTAGGAATGCCTACAGGTT
GCTACTGACAATCAATATATAATCAGTGCATATCTGCCTTTATTAGCATT
CATGCCTTACAACTGCCCGCTATATTTGCCATGTGAAATCTTTAGGCACA
TATGAATTGGGTACTTTTCTCTTCATTTATCACATCCTGGCTTATAACCC
TACCCCAGATTTCTCTACCCCCGTTATATTCTCCGGCCTACCATGAGTTT
TCCTAGGGTATTGCAACTTGTTAAACATCTTAACATTCCTTTCCTGTCCA
CCATTTAATTCTTTTCCTAATCTCCCTTTTAGGATCAATCTCCTCTTTCT
CGCAAATTTTTTTTTTCCTCGAATTGGGTCTTTTCTCCTATATGTATCTT
TCCTCCCTTCCCCCGAATTCCCCTCTTTTTCCCCCTTTCTACCCTCCTTT
TCCCTTCCTTTTCAACCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_i17.b1 MSMg01no403_i17.b1 CHROMAT_FILE:
MSMg01no403_i17.b1 PHD_FILE: MSMg01no403_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:52 2005
         (470 letters)



>mm_chr8_41557831_41558700
          Length = 870

 Score =  866 bits (448), Expect = 0.0
 Identities = 460/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctgtttgtccccagtctcgttcaacaataagatatgaaattgtgtaacagacttt 66
           |||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaattctgtttgacgggagtctcgttcaacaataagatatgaaattgtgtaacagacttt 611

                                                                       
Query: 67  tccctccgccttcacctgtgaaaaacagaggctagtaaaagaaaagcgggtgcactctca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tccctccgccttcacctgtgaaaaacagaggctagtaaaagaaaagcgggtgcactctca 551

                                                                       
Query: 127 ccggctttgcccttcccagggtttgcgctgctctctgtccaggtctgagaatccttaagg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ccggctttgcccttcccagggtttgcgctgctctctgtccaggtctgagaatccttaagg 491

                                                                       
Query: 187 agatggctctgggactctctcagaggctttgcaggaaactggtggttttcaggactgaca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agatggctctgggactctctcagaggctttgcaggaaactggtggttttcaggactgaca 431

                                                                       
Query: 247 aaaaaataatcagaagcccaagtcaactcttaatagcacagctgaatatttctcaaaaaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaaaaataatcagaagcccaagtcaactcttaatagcacagctgaatatttctcaaaaaa 371

                                                                       
Query: 307 aatgaaatgcagacctctcgcaatgcaaggcgctcttgggaaagacccatgacaaccaag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aatgaaatgcagacctctcgcaatgcaaggcgctcttgggaaagacccatgacaaccaag 311

                                                                       
Query: 367 gactacaaggaaaatacataaaaccaggttctctactagagaaccattctgttttgtctt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gactacaaggaaaatacataaaaccaggttctctactagagaaccattctgttttgtctt 251

                                                       
Query: 427 cttgcattccaggttatgctaaagtgacagtccccaactccgag 470
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cttgcattccaggttatgctaaagtgacagtccccaactccgag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_i17.g1 MSMg01no403_i17.g1 CHROMAT_FILE:
MSMg01no403_i17.g1 PHD_FILE: MSMg01no403_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:52 2005
         (331 letters)



>mm_chr8_41403194_41403924
          Length = 731

 Score =  632 bits (327), Expect = 0.0
 Identities = 330/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctgtggcattagtgagaaaagatcccagttcttatatttacactgctgacatttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctgtggcattagtgagaaaagatcccagttcttatatttacactgctgacatttatt 260

                                                                       
Query: 61  aatacttgagttagagctactctagctatagggcgatgcaaggtacttacagaatccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatacttgagttagagctactctagctatagggcgatgcaaggtacttacagaatccttc 320

                                                                       
Query: 121 accttgtcttgttattagatgtcagtaagctttgaggctgttactagacaagcaatgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttgtcttgttattagatgtcagtaagctttgaggctgttactagacaagcaatgtgc 380

                                                                       
Query: 181 ttgaacattggagttatttctgatgagacgtggagtggtgaggaaggtcatgagttgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaacattggagttatttctgatgagacgtggagtggtgaggaaggtcatgagttgtat 440

                                                                       
Query: 241 atgtaagtcctctttaacagttgagtaggaatgcctacaggttgctactgacaatcaata 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggaagtcctctttaacagttgagtaggaatgcctacaggttgctactgacaatcaata 500

                                          
Query: 301 tataatcagtgcatatctgcctttattagca 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 tataatcagtgcatatctgcctttattagca 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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