BAC Information

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BAC

Clone NameMSMg01-403N19
Chromosome8 (Build37)
Map Location 45,969,828 - 45,970,066
singlet/doubletsinglet
Overlap geneLOC100039508
Upstream genenone
Downstream geneFat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403N19.T7 (MSMg01no403_n19.b1)MSMg01-403N19.TJ (MSMg01no403_n19.g1)
ACCAG502672AG502673
length885777
length of high quality
(start - end)
---239 (72 - 310)
definitionCHROMAT_FILE: MSMg01no403_n19.b1 PHD_FILE: MSMg01no403_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:18 2005CHROMAT_FILE: MSMg01no403_n19.g1 PHD_FILE: MSMg01no403_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGACGCTAAACGACTACTAATGCAAACGGAGGCGCGGAATCATTAA
GGTAGCAGAGGACCCAACAGGCTGATGCATGTGATTTTTGTATGAAGCAG
GGGCATTCAGGTTGTCTCTTTGCCAATTTCTTTCTTCCTCCCTCCCTCCC
TCCCTTCTTCGGGGGGAAAAAAAAAAAAAAAAAACAAAAGAAAAAAAGAG
AAAAAAAAAAAAAAAAAACAAAAAAGGAGAAAGAGAAAGAAAAAAGAATA
ATAAGCAAAACAAAGAAGGAAAAAAAAAAAAAAACAAGAAAAAAAAAAAA
AGAGAGGAAAAAAAAGAAATTTTATAAAAGAAAAAAAAAGAAAGAAAAAG
TACAAAGAAAAAATAAGAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAA
ATAAAAGAAAAAAAAAAACAAAAAAAAGATAAGGAGAAGAGAATAAAAGA
AGAGAAAAAGAAAAAAAAGAACAGGAGAAAAAAGAGAAAAAGAAAAAAAA
AGAGAGAAAAAAAGAGAAAAAAAGCAAAAAAAGAAAAAACAATAAAGGAA
AAAAATAACAAAGAAAAAAGAGAAAAAAGAGAATAGAGAACAAAAAACAA
GGAAAGGGAAAAAAAAAAGAAGAAAGGTAAAAAAAGAAAAGATAAAGAGA
ACGATGAAAAGAAAGAAGCCAAAATAAAAAGGGTAAAAGAAAAAGGGAAT
TGAAAAAACGAAAAAGAAGAAAAAAAGAGAGGAAAAAAAAAAAAAAAAAC
ACGGGAGCGGCATAAGAGATAACGAAAAGAGAATAGAGAAAAAAAAGATA
AACAAAAGGACATGGAATGAGAACATAGAAAAAAAAAAAAAATAAAAAGA
GGAATAAGAAAACAAAGCAAGAAATAGAGAACAAN
TGTGTTAGGCCGGGCGAGCGCCTGTTTCACAAATTTAGGNGACCTATAGA
AGTACCAGCAAAATTCAATGACAAGCTTGTTTCTCAGTGCTGAACTGTAG
ATAACACCCCCCTCTATGGAAGAACAGATAAAAGCCTGATAGATCATAGA
TGCCTATTAATTATTTACATAAGTAAAGCTTACTGCGACTCACTTATGTG
CTCCGAATCTTACCCGGGTGCAATTAATTAGAAATGAGATCAAAGCTACA
TGTTCCTTTTGATGTCCTATTTATATAACTTATTTCTGTCAGAAGAAAAT
AATCACAATGTTTTTTGCCATGTGAATACAGGCAAGTCCTTTCAAACATT
GTTTTGAGCTTCTTGGCTTTTTCTCACAGAGGAGACGTCCTGTGAGGCGA
CATCTTGTCTATTCTCACTGCGTCCTGTTCTATACACACGCTTGGTGGTC
TCTCCAGCCACGTTGGTCCTCTGCTTTATTTTTGCTTTATTGACATAGTT
TCCGCAGCCCTTGCACTATCCACTTCTTATCCTTTGACCTTGAGTCTTCT
CTTTAGGAAACAGACCACCGCGGCTATGCTGTCCCTATGTGCTAACGCAT
TCATTTTTGCATTTTAGCACCTGTACACCCCTCCCCTTACCCCTTTCTCC
CATATGATACTGAGCCTTTTCCAACGCCGCCCATTATCGTTTGCGCGCCT
TCCGTTACACTCATTTCCCTTCTCTTTTTTCTCCCACCTTATCCACACTA
TACCTTGATCTATTCCTCTTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_n19.g1 MSMg01no403_n19.g1 CHROMAT_FILE:
MSMg01no403_n19.g1 PHD_FILE: MSMg01no403_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:18 2005
         (239 letters)



>mm_chr8_45969628_45970266
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcttgtttctcagtgctgaactgtagataacacccccctctatggaagaacagataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcttgtttctcagtgctgaactgtagataacacccccctctatggaagaacagataa 260

                                                                       
Query: 61  aagcctgatagatcatagatgcctattaattatttacataagtaaagcttactgcgactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcctgatagatcatagatgcctattaattatttacataagtaaagcttactgcgactc 320

                                                                       
Query: 121 acttatgtgctccgaatcttacccgggtgcaattaattagaaatgagatcaaagctacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttatgtgctccgaatcttacccgggtgcaattaattagaaatgagatcaaagctacat 380

                                                                      
Query: 181 gttccttttgatgtcctatttatataacttatttctgtcagaagaaaataatcacaatg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttccttttgatgtcctatttatataacttatttctgtcagaagaaaataatcacaatg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)