BAC Information

Click to search

BAC

Clone NameMSMg01-404M04
Chromosome8 (Build37)
Map Location 59,340,093 - 59,340,387
singlet/doubletsinglet
Overlap genenone
Upstream geneAdam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
Downstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404M04.T7 (MSMg01no404_m04.b1)MSMg01-404M04.TJ (MSMg01no404_m04.g1)
ACCAG503352AG503353
length753744
length of high quality
(start - end)
476 (59 - 534)295 (322 - 616)
definitionCHROMAT_FILE: MSMg01no404_m04.b1 PHD_FILE: MSMg01no404_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:32 2005CHROMAT_FILE: MSMg01no404_m04.g1 PHD_FILE: MSMg01no404_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCACTATTTTCAGAGAATCCGCGGAATTCAGTAAAA
ATCTCCCACACAGAATTCTAAAAATTATGGAATACAATGAAAGAAGTGCT
AAAAGGAACAGCACTAAGTGCTCCATAAAAAAATTGAAGTGATCTTATCC
TAATGCTTACCAGCACATCTGAAAGCTCTAAAACAACAAGAAATAAGCAC
ACTCAAGAGAAGTAGACAGCAAGAAATAATCAACTGGAATATTGGGATCA
ATAAAACAGAAGTTATGGTAGCAGCGCCCTTCACAGTAGCCTCAAATAAT
GTAAAATGTCTTGGGGTAACTCTAACCAAACAAATGAAAAAAGATCCAAG
TTTTTGAAGAGAGAAATTGAAGATATCAGATGGAAAGATCTCCCATGCTC
ATGGATTGGTAAGATTAACATAGTAAAAATGTCCATCCTACCAATAGCAA
CCTACAGATTCAATATAATCCCCATGAAAAACTCCTAAACAATTCTTTAC
AGATCTTGAATTGACAGTAGTAAACTTTCATATAAAAAACCCCAAAGCTC
TTGGTAGATAAATAATTCTGTAGAATTATAGAATTTCCGGAGGTATCATC
ATCCCTAATTCCCAGTTGTACTATAGAGCTATAGTATTATTACTAATCCC
CTCGGTTTTGGAATAAAACAGACATGCTGGTCAATGGAATTGAGTGCAAG
ATCCCGAAACAACTTCTCTCTCCCATGTGAAACCTGGAATTCCTATAACG
AAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCAAACATTTAAGGTATAAGCCACTGGTAACA
AAAATGAAAATTAAAGAGATTTCCTGTCTCAAATAGCAGCACACAAAAGC
TAAGATTTTAAAACCACTCATAATTCCTAGCGAACTGTTTAAAAAGAGAC
AGGAAGTGAAAAACAGTTTAGAATTCCAAGTCTGTCCTCCCTTGCAACGA
GACTGGGAATTTCAGGCATTAATTAATGAAATGTTTTCAGCTTTGTTGTT
AATTCTCTTCTGCTTTTTTTAGATTCTTCGCAGCACTGTCTCTTCACAGC
CTCCTCGTAGATCTTAATACAATGTTCAGGAATATCTAAAGGAAAGCAGA
CATGCCTGTCACAGTTGTAAACTTATTTGGGAGAAGTTATGGCCCTGACT
GTACTGTATCTGCGTTTGTTGATTCTGCACACAAATCTTTGAGGGGTGTT
CTTTTCCTTCTGAGCGGTTTGCATCATAAACTTTAGTGAACACCAAAATG
GAGAAAACAGTAGGCAGTTAAATGTTGAAGTCTGTTTTCCTCTTATCCAA
TAACCCCCCTTTTATCATTATTTAAGAGAAGCAAAGACCATTAGAGAGAG
CTAATTGCCTTTATAGTCTTCAGAATATACTGATGCTCCTGATAGGAGAA
TTGAGGCAAATTGCATTCCTCAAAAGGTCTGGGAACATATCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_m04.g1 MSMg01no404_m04.g1 CHROMAT_FILE:
MSMg01no404_m04.g1 PHD_FILE: MSMg01no404_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:32 2005
         (295 letters)



>mm_chr8_59339893_59340587
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattcttcgcagcactgtctcttcacagcctcctcgtagatcttaatacaatgttcagga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gattcttcgcagcactgtctcttcacagcctcctcgtagatcttaatacaatgttccgga 260

                                                                       
Query: 61  atatctaaaggaaagcagacatgcctgtcacagttgtaaacttatttgggagaagttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatctaaaggaaagcagacatgcctgtcacagttgtaaacttatttgggagaagttatg 320

                                                                       
Query: 121 gccctgactgtactgtatctgcgtttgttgattctgcacacaaatctttgaggggtgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccctgactgtactgtatctgcgtttgttgattctgcacacaaatctttgaggggtgttc 380

                                                                       
Query: 181 ttttccttctgagcggtttgcatcataaactttagtgaacaccaaaatggagaaaacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttccttctgagcggtttgcatcataaactttagtgaacaccaaaatggagaaaacagt 440

                                                                  
Query: 241 aggcagttaaatgttgaagtctgttttcctcttatccaataaccccccttttatc 295
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcagttaaatgttgaattctgttttcctcttatccaataaccccccttttatc 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)