BAC Information

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BAC

Clone NameMSMg01-404P02
Chromosome8 (Build37)
Map Location 31,467,309 - 31,467,496
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404P02.T7 (MSMg01no404_p02.b1)MSMg01-404P02.TJ (MSMg01no404_p02.g1)
ACCAG503490AG503491
length813783
length of high quality
(start - end)
189 (62 - 250)245 (66 - 310)
definitionCHROMAT_FILE: MSMg01no404_p02.b1 PHD_FILE: MSMg01no404_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:47 2005CHROMAT_FILE: MSMg01no404_p02.g1 PHD_FILE: MSMg01no404_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
ATGGTTCTGCGTAAAGTTCCATAAACTGAGACTTGAGTGTGACGTGGGGT
ACCCATGTCCCCAGTGTCATGCTGATACTCATATAGCTAGTAAAACATCT
GTGTTCTTTGAGCTTCAGAAGGCTTTTTCTTATCCTTCCAATACAGAAAA
AAGATGCTCAGGATAAGAGAGTGATGGAGTATTCCGGAAGGGTTTGTGGT
GGAGCTACTGAACAACCTGATGTCCAATTAGACAGGCACCAAATAAGCTA
ACAAGAGGAAGGAAAAATGTTTCTTATCTCTTTCTTATTGAGAGACCGCA
AAATCTTGCCCGAGAACTGCAAGATCTTTGGCCCTGGCCCTGCCGTTTTA
TTACAGGCACCCACCTATTCCTCAGATTGTATATTTCTATATAATTCTCT
CGCTAGTTACCGCATTACTTCGCATGTGATAAACACCCCCTCGTTCTTCC
CAAATTTATTACTCGCCCTCATATGATTATGTCCATTTATTCTTCCTTCC
CATCCCAATTATTTAACACCCCCCCCCCTTTCATTTTTTCTCTATTTCCC
CCACTCCTTTCTTTTTTTTTTCCCACTTCCTCCTGCTCTCTTTTTTATAT
ATTCCCCCCCTTTTTCTTCTTTCTTTTTTTTTCATCATTCCCCCCCTCAT
TTTTCTCCCCTTCCCTCACTTATCTTTATACCATTACCCCCCCCCCCTTT
TCATTTTTAAAATTTCTCCTTTATTTTTCTCCCCCCCCCCCCCCCCTCTC
TTTTATATTTTTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCT
GAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAG
GTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGGGGAACACTCCTCCAT
TGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCATTCTGGCG
GTTCCTCAGAAAATTGTTCATAGTACTACCGGAGGATCCCGCAATACCTC
TCCAGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGC
TCCACCACCGCCCATAGCAGCCTTGTTTATAATAGCCAGAATCTGGAAAG
AACTCAGATGCCCCTTATCAGAGGAATGTATACTGAACACGTGTTACTCT
TACCGAACGGAGTACTACTCAGTTATTATTAATAACGAATTTATGATATT
TCCCAGCTTAAAGTATGGACCTTGTAGTTTATTTATCCTGTATGCAGCTT
ATTTATCCCTTAGTTTAATTCGCACTACATTCTACTTTTTTGTAATATTT
CCGTCTACACCCCCTTTATTTCTTATTTTTTTCTCATCTGTTTGTCTCCT
CTTACTCCGCGTCCATTTTCTTTTGTATTCTCCCTGCTCTAATATTTTTA
ACCTCCTCGTGATGGCGCCTCTTTATACCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_p02.b1 MSMg01no404_p02.b1 CHROMAT_FILE:
MSMg01no404_p02.b1 PHD_FILE: MSMg01no404_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:47 2005
         (189 letters)



>mm_chr8_31467109_31467697
          Length = 589

 Score =  340 bits (176), Expect = 2e-98
 Identities = 185/188 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagttccataaactgagacttgagtgtgacgtggggtacccatgtccccagtgtcatg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 388 taaagttccataaactgagacttgagtgtgaggtggggtacccatgtccccagtgtcatg 329

                                                                       
Query: 61  ctgatactcatatagctagtaaaacatctgtgttctttgagcttcagaaggctttttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgatactcatatagctagtaaaacatctgtgttctttgagcttcagaaggctttttctt 269

                                                                       
Query: 121 atccttccaatacagaaaaaagatgctcaggataagagagtgatggagtattccggaagg 180
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atccttccagtacagaaaaaggatgctcaggataagagagtgatggagtattccggaagg 209

                   
Query: 181 gtttgtgg 188
           ||||||||
Sbjct: 208 gtttgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)