Query= MSMg01no405_m18.b1 MSMg01no405_m18.b1 CHROMAT_FILE:
MSMg01no405_m18.b1 PHD_FILE: MSMg01no405_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:53 2005
(244 letters)
>mm_chr8_63827394_63828034
Length = 641
Score = 412 bits (213), Expect = e-119
Identities = 235/243 (96%), Gaps = 3/243 (1%)
Strand = Plus / Minus
Query: 1 ccaatgatgaatggctccgagctgcgcaactgacgagttttacaagcaaagaaggaaata 60
|||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 440 ccaatgatgaat--ctccgagctacgcaactgatgagttttacaagcaaagaaggaaata 383
Query: 61 aagaaggaaacagcgcaatactgatgtgtgtgggccccccaaaaaaggttaactcccctc 120
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 382 aagaaggaaacagcgcaatactgatgagtgtgggcccccc-aaaaaggttaactcccctc 324
Query: 121 gtttctctctgcatagtttgagggaatctcacaaaagacagttgaaatcctcgtcgtttt 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 323 gtttctctctgcatagtttgagggaatctcacaaaagacggttgaaatcctcgtcgtttt 264
Query: 181 cttgtggctgctgttattttttacttcctcagacagacattctatctgttatcaacacat 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 263 cttgtggctgctgttattttttacttcctcagacagacattctgtctgttatcaacacat 204
Query: 241 gtg 243
|||
Sbjct: 203 gtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 641
Length adjustment: 9
Effective length of query: 235
Effective length of database: 632
Effective search space: 148520
Effective search space used: 148520
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no405_m18.g1 MSMg01no405_m18.g1 CHROMAT_FILE:
MSMg01no405_m18.g1 PHD_FILE: MSMg01no405_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:53 2005
(273 letters)
>mm_chr8_63656365_63657036
Length = 672
Score = 505 bits (261), Expect = e-147
Identities = 270/273 (98%), Gaps = 1/273 (0%)
Strand = Plus / Plus
Query: 1 acaggcatttagccactacgatggccttccagactttgctcaatttgtagagtatgacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggcatttagccactacgatggccttccagactttgctcaatttgtagagtatgacaa 260
Query: 61 ggtgattgggagagataaggatcttgccttctaagttcacaatctggtggaagagatagg 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgattgggagagataag-atcttgccttctaagttcacaatctggtggaagagatagg 319
Query: 121 cagttcaaatgcgttcacagcgagatacagttgccactggaggacttgcaacagttccag 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 cagttcaaatgcgttcacagcgagatacagtcgccactggaggacttgcaacagttccag 379
Query: 181 gagtctctgatcgtgggtagatacagaaagaagataacaaaacttctcaaaggacttggg 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagtctttgatcgtgggtagatacagaaagaagataacaaaacttctcaaaggacttggg 439
Query: 241 gttccactgagctctgaaaactgaaaggtggtt 273
|||||||||||||||||||||||||||||||||
Sbjct: 440 gttccactgagctctgaaaactgaaaggtggtt 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 672
Length adjustment: 9
Effective length of query: 264
Effective length of database: 663
Effective search space: 175032
Effective search space used: 175032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
