BAC Information

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BAC

Clone NameMSMg01-406I18
Chromosome8 (Build37)
Map Location 92,553,043 - 92,553,252
singlet/doubletsinglet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406I18.T7 (MSMg01no406_i18.b1)MSMg01-406I18.TJ (MSMg01no406_i18.g1)
ACCAG504717AG504718
length731751
length of high quality
(start - end)
210 (323 - 532)237 (76 - 312)
definitionCHROMAT_FILE: MSMg01no406_i18.b1 PHD_FILE: MSMg01no406_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:54 2005CHROMAT_FILE: MSMg01no406_i18.g1 PHD_FILE: MSMg01no406_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTAAAATTGCGGCCGCTAAACGAATACTAAATGCAGAACACCGCGGA
ATCATGGTGTTACACACATCTTGNAATTTCTGTGCCTAATCTCTAAGATC
ATTTGTTTCTCTAGGAGCCCTTTCAACAAATAATCTAGCAGTCAAGGTCT
GGCATCTGGGTGTGCTCATTGTTATCTGGATTGCCTCAGCTTGTATCTGT
TCTGAGTAGGCAGAGCTAGAAGATCAAATATATGTATACATATGTATGTA
TACATATATATGTATATATATATGTATATATAATATGTAATCATATATAA
TACATCAATGTATANGTCATTGTAAGTCTATACTAATCATTGTATAGGCA
CTTGTGTTTAATTATTTCTACCTCTATCTAATTTGGGAGTTTAATCTGTT
ACCTCTGGTACTAATTCAGCACCATTAGCTTTCTTCCCTTATTTATTTGT
AAACTTCATTTTTTCAGAGACTGAAAAAAAATCTGTCCCCCATGATTCAC
ACTTTTATTCTCCTTGTTGCACTTTAATCTGCACGTAAGCACAGATTTGT
AAGTCTAAGAGCACAAGAGCAATATCTTCTCATATGAGTACCATGATTAT
ACACAACGCTTTTGGTCTTTAGCATAAAGCTTGCCGTCTATATATCATTC
TCTCTGGCTCCTTCAGCTCAACATATGCTCTCTTTATGAACAAAAAAACT
ATGTTGAGAAGGCACACCCAAACTGGTATTG
CTCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGAAATTTTGGAGCAAGGCTGTC
CTATCATCTGACAACTATTTCCCCTTTAAGAGACAGCTCTGTGCTTGCTT
GCCCTTGCTTTCACTAGAAAGTTTATTCCTTCACTGGCATTAAACTCTAC
TTCTTTGTGATTTCAGTGTATATTGAAGACCAGCAGAGACATCCAGCCTC
ATGAACTGAACAATTACTGAATTCTTGGACTTTTCAGTGGTAGATATTCA
TCATTGGTTTAGCTGTTTCTCAGCCTGTAAGACATTCTAAGAAATCTCAG
AGAAATTACACACACACACACACACACACACACACACTCACACACATATA
CACACTCTCTTACCAACTCACACCCAGGCATTTGTCCATGTGTGCATGTG
CCGAGGGCAGTGTTTCATGTCGAGTGTTTTCCTCCATGGGTTTCCCTCCT
ACCTTTTGAGGCCTGCTCTCCCACTGAACCTGGAACTCCTCTTTATACTG
TTTGTTCCCTCGATCCCGATGGAACCCCTTTTCTTTTATTTTTCTTTCTA
CGGTCATACATTTTTTTCTCTCACCTCCTCCTTCTCCTTATGTTTGCCTT
TTTCTATCTCTGTTCCCTTTTTCTCCGCCTTCCCCTCTTCCTTTTCTTCT
TTCCTCCCCCCCCCCCTCTCCTTTTCCATCTTCATCCCTCTCCCCCTCCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_i18.b1 MSMg01no406_i18.b1 CHROMAT_FILE:
MSMg01no406_i18.b1 PHD_FILE: MSMg01no406_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:54 2005
         (210 letters)



>mm_chr8_92552843_92553452
          Length = 610

 Score =  406 bits (210), Expect = e-118
 Identities = 210/210 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtctatactaatcattgtataggcacttgtgtttaattatttctacctctatctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 taagtctatactaatcattgtataggcacttgtgtttaattatttctacctctatctaat 351

                                                                       
Query: 61  ttgggagtttaatctgttacctctggtactaattcagcaccattagctttcttcccttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttgggagtttaatctgttacctctggtactaattcagcaccattagctttcttcccttat 291

                                                                       
Query: 121 ttatttgtaaacttcattttttcagagactgaaaaaaaatctgtcccccatgattcacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttatttgtaaacttcattttttcagagactgaaaaaaaatctgtcccccatgattcacac 231

                                         
Query: 181 ttttattctccttgttgcactttaatctgc 210
           ||||||||||||||||||||||||||||||
Sbjct: 230 ttttattctccttgttgcactttaatctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)