BAC Information

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BAC

Clone NameMSMg01-406I20
Chromosome8 (Build37)
Map Location 120,763,561 - 120,935,242
singlet/doubletdoublet
Overlap geneCdh13
Upstream gene4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneHsbp1, Mlycd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406I20.T7 (MSMg01no406_i20.b1)MSMg01-406I20.TJ (MSMg01no406_i20.g1)
ACCAG504721AG504722
length731739
length of high quality
(start - end)
435 (77 - 511)234 (80 - 313)
definitionCHROMAT_FILE: MSMg01no406_i20.b1 PHD_FILE: MSMg01no406_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:54 2005CHROMAT_FILE: MSMg01no406_i20.g1 PHD_FILE: MSMg01no406_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,934,808 - 120,935,242)(120,763,561 - 120,763,794)
sequence
GGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXAACTGCAACAGAATCC
GCGGAATTCCAGTCTTTCCATGAGAACAGCAAGTGGTCTTAACCACTGAG
CCACCGCTCCAGCCCTCTGCATTTCATTATAATGCTATAATTGCTCCACT
TTATTAGTAGTGACTGTTGATCTCACACTGTGTTTAATTTATAAATAATA
TGTATCATATACCTATACTACGGGTTTCAAACTACCCACGGCTTCAGAAA
ATAAGGGTCTCTTGTACTGGCAGGACTGGAATTTGAGCTTGGGGCTGTCT
GATCAGCAGATGGCATTTTTTTTCCCTGCCACAACATTCTATAGGTAGCC
TTGGCAGTACACCATGTCCCTGAGAGCCTGGTCGCTGCTCTTCTCTTGTC
TTCAAAGTTAAGGGGAGAGTTTCAATCCTTGAAAACAGCCTGGACCATGG
TCCATGAACCATGACTTAAATTCCACAGTTATTCCTTGACATTTGAGCTA
GTGGCCTGAGGTAGTATAGAAAGTACTTTCTGACAGCCAGTTTTATAGGG
CAGCGGCACTTAATTCTTAAGTTTGGCATCAAGACACATTGTCCAACTCT
GGATATTCTCTATGAAGCTTGGACATTGGCATCACAGAATCTGGGCTCTG
ATACCTTGAATCTAACTGGTGACCTCCTGACAATCTACTACTGTATTTCT
GTGCAAATCTCTTGCTCTCCCACCCTGGTGA
NNAACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGACATAGAATTGGCCAT
GTGATTATCAGGAAGACATGGCTACCTTTGGAGCGTCGCAGAGATGCTGT
GGATTCTGATTGTACCATTTCTGAACTGTGTATATGGGGACACATCACTG
ACCCTTGCTGATCTGTCTTCATCAGCTGCCCTGTCTGTCACTACAGCCAC
CATAAACATGTGACTCCCAAGCTACCAAAATGTGTCCGGTGTGTCTTGAG
GCATCCAGGAAGGGTAAAGACTCCATTGCTTGGAGTCAGGAAGCAGAAGT
TAACGAAAGCTACTGGTCTACCTGCTTTCTCCCTATTCAGTACCGGGCCC
CAACCCACAGGAAGGCGCCATTGACAATTACAGTGGGTTTTCCTATCTTC
AGTTGACCCAGTCAAGACAATCTCTCACAAGTATCCCAGAGACACCTTTC
CTGGGTGGGTGCAGGCCTTACTTTCTTAGGTAACAGTCCAAATGTCTCTG
GTGGCAGATTTCTTCTCTGTCTTTTGTGAGGGACTCCTGGGTTCCAAGTC
CCCATAGAGTCTGTTCCCCACATCTCCCTGCCCTCCTTTGTCCTTATTAA
TCTTCTTACCTTATTGACCCATATCACTTTGTCCCTTCTTCTTTGTCTGG
CGCCTCTCACTTTCTCCTTGTTTTATAATCCGCTGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_i20.b1 MSMg01no406_i20.b1 CHROMAT_FILE:
MSMg01no406_i20.b1 PHD_FILE: MSMg01no406_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:54 2005
         (435 letters)



>mm_chr8_120934565_120935399
          Length = 835

 Score =  748 bits (387), Expect = 0.0
 Identities = 423/435 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcaagtggtcttaaccactgagccaccgctccagccctctgcatttcattataatgct 60
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 678 cagcaagtggtcttaaccactgagccaccactccagccctctacatttcattataatgct 619

                                                                       
Query: 61  ataattgctccactttattagtagtgactgttgatctcacactgtgtttaatttataaat 120
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ataaccactccactttattagtagtgactgttgatctcacactgtgtttaatttataaat 559

                                                                       
Query: 121 aatatgtatcatatacctatactacgggtttcaaactacccacggcttcagaaaataagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 558 aatatgtatcatatacctatactacgggtttcaaactacccacggcttcagaaaagaagg 499

                                                                       
Query: 181 gtctcttgtactggcaggactggaatttgagcttggggctgtctgatcagcagatggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtctcttgtactggcaggactggaatttgagcttggggctgtctgatcagcagatggcat 439

                                                                       
Query: 241 tttttttccctgccacaacattctataggtagccttggcagtacaccatgtccctgagag 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 438 tttggttccctgccacaacattctataggtagccttggcagtacaccatgtccctgagat 379

                                                                       
Query: 301 cctggtcgctgctcttctcttgtcttcaaagttaaggggagagtttcaatccttgaaaac 360
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 378 cctggtctctgctcttctcttgtcttcaaagttaaggggagactttcaatccttgaaaac 319

                                                                       
Query: 361 agcctggaccatggtccatgaaccatgacttaaattccacagttattccttgacatttga 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agcctggaccatagtccatgaaccatgacttaaattccacagttattccttgacatttga 259

                          
Query: 421 gctagtggcctgagg 435
           |||||||||||||||
Sbjct: 258 gctagtggcctgagg 244


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no406_i20.g1 MSMg01no406_i20.g1 CHROMAT_FILE:
MSMg01no406_i20.g1 PHD_FILE: MSMg01no406_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:54 2005
         (234 letters)



>mm_chr8_120763361_120763994
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgacatagaattggccatgtgattatcaggaagacatggctacctttggagcgtcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgacatagaattggccatgtgattatcaggaagacatggctacctttggagcgtcgc 260

                                                                       
Query: 61  agagatgctgtggattctgattgtaccatttctgaactgtgtatatggggacacatcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagatgctgtggattctgattgtaccatttctgaactgtgtatatggggacacatcact 320

                                                                       
Query: 121 gacccttgctgatctgtcttcatcagctgccctgtctgtcactacagccaccataaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacccttgctgatctgtcttcatcagctgccctgtctgtcactacagccaccataaacat 380

                                                                 
Query: 181 gtgactcccaagctaccaaaatgtgtccggtgtgtcttgaggcatccaggaagg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgactcccaagctaccaaaatgtgtccggtgtgtcttgaggcatccaggaagg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)