Query= MSMg01no407_d20.b1 MSMg01no407_d20.b1 CHROMAT_FILE:
MSMg01no407_d20.b1 PHD_FILE: MSMg01no407_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:49 2005
(612 letters)
>mm_chr8_61324246_61325257
Length = 1012
Score = 801 bits (414), Expect = 0.0
Identities = 456/470 (97%), Gaps = 2/470 (0%)
Strand = Plus / Minus
Query: 5 gaattcccaggtggggcagtctttgaatggccctttcttccgactctgctcc-cactatc 63
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 470 gaattcccaggtggggcagtctttgaatggcccttccttccgactctgctccacactatc 411
Query: 64 tcttcgtatttgcttccctgagttagtcttttacatgtttgatttttactgcctctcatt 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 410 tcttcgtatttgcttccctgagttagtcttttacatgtttgatttttactgcctctcact 351
Query: 124 attagaaaatttcagaatccagagttcttcgggcacaaaaatagggctcttatctaaata 183
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 350 attagaaaatttcagaatccagagttctttgggcacaaaaatagggctctcatttaaata 291
Query: 184 ctgataacatttaataatatattatctatttcaaataaaataatggatctttcgttactg 243
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 290 ctgacaacatttaataatatattatctatttcaagtaaaataatggatctttcattactg 231
Query: 244 agtaatattgtcaattcttgattgccatcacacatgatgatctgtttcatccctgatacc 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 agtaatattgtcaatccttgattgccatcacacatgatgatctgtttcatccctgatacc 171
Query: 304 ctcagtaattagaaggacagaactgattcctgcaagttgtccttccatctacatatatat 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 170 ctcagtaattagaaggacagaactgattccagcaagttgtccttccatctacatatatat 111
Query: 364 tccatggatggtttacacagtacccaaaaattaataaataaatgtaaaaatatgtattct 423
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 110 tccatggatggtttacacagtacccaaaaattaataaatgcatgtaaaaatatgtattct 51
Query: 424 agtttatatctctgattggttttataata-tctaagtttaagtttatttc 472
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 50 agtttatatctctgattggttttataatattctaagtttaagtttatttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_d20.g1 MSMg01no407_d20.g1 CHROMAT_FILE:
MSMg01no407_d20.g1 PHD_FILE: MSMg01no407_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:49 2005
(495 letters)
>mm_chr8_61133891_61134785
Length = 895
Score = 919 bits (475), Expect = 0.0
Identities = 492/501 (98%), Gaps = 6/501 (1%)
Strand = Plus / Plus
Query: 1 caggacagccagggctacacagagaaaccctgtctcaaacaaacaaacaaacaaacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 caggacagccagggctacacagagaaaccctgtctcaaacaaacaaacaaacaaacaaac 254
Query: 61 aaaaccgaaaacaaaaac------gaaaacgaaaacaaaaacaaaaacataataataatt 114
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 255 aaaaccgaaaacaaaaacgaaaatgaaaacaaaaacaaaaacaaaaacataataataatt 314
Query: 115 ttatattgtaaacatgttaaaagtaatccctctaaatattttaggagtaaaactgtattg 174
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 315 ttatattgtaaacatgttaaaagtaatccctgtaaatattttaggagtaaaactgtattg 374
Query: 175 ttatccttgtatccagtgtattggctaggtatgggagagaacacatccattatatcatca 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttatccttgtatccagtgtattggctaggtatgggagagaacacatccattatatcatca 434
Query: 235 tttgctctttagtacctttggaagtgactgatgcttgtttttcatactgaaaggtaccat 294
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 435 tttgctctttagtacctttggaagtgactgatgcttgtttttcagactgaaaggtaccat 494
Query: 295 ctgaatgtacaaagttgtatgaaaagactccgctttttatatatgagcaatcaggaataa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgaatgtacaaagttgtatgaaaagactccgctttttatatatgagcaatcaggaataa 554
Query: 355 aactggtggatttttttaaacatgaaatttagcacggaatgaatgtaatgacttggtttc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aactggtggatttttttaaacatgaaatttagcacggaatgaatgtaatgacttggtttc 614
Query: 415 aactctgtgcagcaatcaaagaaactctctaatattaagccactgttgtcttccatacga 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aactctgtgcagcaatcaaagaaactctctaatattaagccactgttgtcttccatacga 674
Query: 475 agctgctctttctaaatggtt 495
|||||||||||||||||||||
Sbjct: 675 agctgctctttctaaatggtt 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|