BAC Information

Click to search

BAC

Clone NameMSMg01-407D20
Chromosome8 (Build37)
Map Location 61,134,085 - 61,324,715
singlet/doubletdoublet
Overlap gene4930431L04Rik
Upstream geneLOC100040711
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407D20.T7 (MSMg01no407_d20.b1)MSMg01-407D20.TJ (MSMg01no407_d20.g1)
ACCAG505245AG505246
length749766
length of high quality
(start - end)
612 (44 - 655)495 (75 - 569)
definitionCHROMAT_FILE: MSMg01no407_d20.b1 PHD_FILE: MSMg01no407_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:49 2005CHROMAT_FILE: MSMg01no407_d20.g1 PHD_FILE: MSMg01no407_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,324,246 - 61,324,715)(61,134,085 - 61,134,585)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCAGGTGGGGCAGTCTTTGAATGGCCCTTTCTTCCGACTCTGCTCCC
ACTATCTCTTCGTATTTGCTTCCCTGAGTTAGTCTTTTACATGTTTGATT
TTTACTGCCTCTCATTATTAGAAAATTTCAGAATCCAGAGTTCTTCGGGC
ACAAAAATAGGGCTCTTATCTAAATACTGATAACATTTAATAATATATTA
TCTATTTCAAATAAAATAATGGATCTTTCGTTACTGAGTAATATTGTCAA
TTCTTGATTGCCATCACACATGATGATCTGTTTCATCCCTGATACCCTCA
GTAATTAGAAGGACAGAACTGATTCCTGCAAGTTGTCCTTCCATCTACAT
ATATATTCCATGGATGGTTTACACAGTACCCAAAAATTAATAAATAAATG
TAAAAATATGTATTCTAGTTTATATCTCTGATTGGTTTTATAATATCTAA
GTTTAAGTTTATTTCCAGATAGACATTTTAATACACCATGGTTTTCACAC
ACATCACTTCTTGAAGAATTTTTAAAGTATCTTTTCTCCTTATTTATCTC
ATTANATTAGCAAATATCACTGAGCTCCCTCCATATGCTGGGCCATTTGT
TAAGATCATGCAGCTAGAGAAAGAGCCATTATTCGTTAGAGTGTGTTCCA
AACATGTACAAACTATGGATGGATATATCCCCGGCAGTAATCCCATGAT
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAA
ACCCTGTCTCAAACAAACAAACAAACAAACAAACAAAACCGAAAACAAAA
ACGAAAACGAAAACAAAAACAAAAACATAATAATAATTTTATATTGTAAA
CATGTTAAAAGTAATCCCTCTAAATATTTTAGGAGTAAAACTGTATTGTT
ATCCTTGTATCCAGTGTATTGGCTAGGTATGGGAGAGAACACATCCATTA
TATCATCATTTGCTCTTTAGTACCTTTGGAAGTGACTGATGCTTGTTTTT
CATACTGAAAGGTACCATCTGAATGTACAAAGTTGTATGAAAAGACTCCG
CTTTTTATATATGAGCAATCAGGAATAAAACTGGTGGATTTTTTTAAACA
TGAAATTTAGCACGGAATGAATGTAATGACTTGGTTTCAACTCTGTGCAG
CAATCAAAGAAACTCTCTAATATTAAGCCACTGTTGTCTTCCATACGAAG
CTGCTCTTTCTAAATGGTTGGCAGCTCTTGTGTAGGATTTCACTGACAAC
TTTCTAGGAAGTTTCTGGCAGAATAAAAGAGAGTTGACTCATCTCACTCT
CCTGAAAAAAAAGCACCTTTGTCCTTGGCAATTTAAAAAACCCCGATGAA
TAAACTTTTTTGAAAGGGCGAATCCCGGGTTTCTTTCAAAAATTTTCTTC
CCACCAATTCGCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_d20.b1 MSMg01no407_d20.b1 CHROMAT_FILE:
MSMg01no407_d20.b1 PHD_FILE: MSMg01no407_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:49 2005
         (612 letters)



>mm_chr8_61324246_61325257
          Length = 1012

 Score =  801 bits (414), Expect = 0.0
 Identities = 456/470 (97%), Gaps = 2/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaggtggggcagtctttgaatggccctttcttccgactctgctcc-cactatc 63
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 470 gaattcccaggtggggcagtctttgaatggcccttccttccgactctgctccacactatc 411

                                                                       
Query: 64  tcttcgtatttgcttccctgagttagtcttttacatgtttgatttttactgcctctcatt 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 410 tcttcgtatttgcttccctgagttagtcttttacatgtttgatttttactgcctctcact 351

                                                                       
Query: 124 attagaaaatttcagaatccagagttcttcgggcacaaaaatagggctcttatctaaata 183
           ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 350 attagaaaatttcagaatccagagttctttgggcacaaaaatagggctctcatttaaata 291

                                                                       
Query: 184 ctgataacatttaataatatattatctatttcaaataaaataatggatctttcgttactg 243
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 290 ctgacaacatttaataatatattatctatttcaagtaaaataatggatctttcattactg 231

                                                                       
Query: 244 agtaatattgtcaattcttgattgccatcacacatgatgatctgtttcatccctgatacc 303
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 agtaatattgtcaatccttgattgccatcacacatgatgatctgtttcatccctgatacc 171

                                                                       
Query: 304 ctcagtaattagaaggacagaactgattcctgcaagttgtccttccatctacatatatat 363
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 170 ctcagtaattagaaggacagaactgattccagcaagttgtccttccatctacatatatat 111

                                                                       
Query: 364 tccatggatggtttacacagtacccaaaaattaataaataaatgtaaaaatatgtattct 423
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 110 tccatggatggtttacacagtacccaaaaattaataaatgcatgtaaaaatatgtattct 51

                                                             
Query: 424 agtttatatctctgattggttttataata-tctaagtttaagtttatttc 472
           ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 50  agtttatatctctgattggttttataatattctaagtttaagtttatttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no407_d20.g1 MSMg01no407_d20.g1 CHROMAT_FILE:
MSMg01no407_d20.g1 PHD_FILE: MSMg01no407_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:49 2005
         (495 letters)



>mm_chr8_61133891_61134785
          Length = 895

 Score =  919 bits (475), Expect = 0.0
 Identities = 492/501 (98%), Gaps = 6/501 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacacagagaaaccctgtctcaaacaaacaaacaaacaaacaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 caggacagccagggctacacagagaaaccctgtctcaaacaaacaaacaaacaaacaaac 254

                                                                       
Query: 61  aaaaccgaaaacaaaaac------gaaaacgaaaacaaaaacaaaaacataataataatt 114
           ||||||||||||||||||      |||||| |||||||||||||||||||||||||||||
Sbjct: 255 aaaaccgaaaacaaaaacgaaaatgaaaacaaaaacaaaaacaaaaacataataataatt 314

                                                                       
Query: 115 ttatattgtaaacatgttaaaagtaatccctctaaatattttaggagtaaaactgtattg 174
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 315 ttatattgtaaacatgttaaaagtaatccctgtaaatattttaggagtaaaactgtattg 374

                                                                       
Query: 175 ttatccttgtatccagtgtattggctaggtatgggagagaacacatccattatatcatca 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttatccttgtatccagtgtattggctaggtatgggagagaacacatccattatatcatca 434

                                                                       
Query: 235 tttgctctttagtacctttggaagtgactgatgcttgtttttcatactgaaaggtaccat 294
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 435 tttgctctttagtacctttggaagtgactgatgcttgtttttcagactgaaaggtaccat 494

                                                                       
Query: 295 ctgaatgtacaaagttgtatgaaaagactccgctttttatatatgagcaatcaggaataa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgaatgtacaaagttgtatgaaaagactccgctttttatatatgagcaatcaggaataa 554

                                                                       
Query: 355 aactggtggatttttttaaacatgaaatttagcacggaatgaatgtaatgacttggtttc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aactggtggatttttttaaacatgaaatttagcacggaatgaatgtaatgacttggtttc 614

                                                                       
Query: 415 aactctgtgcagcaatcaaagaaactctctaatattaagccactgttgtcttccatacga 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aactctgtgcagcaatcaaagaaactctctaatattaagccactgttgtcttccatacga 674

                                
Query: 475 agctgctctttctaaatggtt 495
           |||||||||||||||||||||
Sbjct: 675 agctgctctttctaaatggtt 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)