BAC Information

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BAC

Clone NameMSMg01-408K05
Chromosome8 (Build37)
Map Location 54,849,544 - 54,849,894
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676688, Aga, Neil3, LOC100040107
Downstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408K05.T7 (MSMg01no408_k05.b1)MSMg01-408K05.TJ (MSMg01no408_k05.g1)
ACCAG506310AG506311
length779766
length of high quality
(start - end)
413 (45 - 457)384 (76 - 459)
definitionCHROMAT_FILE: MSMg01no408_k05.b1 PHD_FILE: MSMg01no408_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:40 2005CHROMAT_FILE: MSMg01no408_k05.g1 PHD_FILE: MSMg01no408_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAGCAGATTACCTTAAAAGTCAGTGGGGAATTGAATGATATATTC
ACAATCCTGTCAACCAAGAATACTTTATCATCTCTCAATAATAAAAGGAA
AAGACTTCCCTAGACAAACAGAAACTGAGGAAGTTCATCACTAGAACTGC
CTTACAAGATATGCTGAAGGGATTTCTTCAAATTGAAATGAAAAGATACT
AAATCATAACATGACAGCATATGAAAGCTCAAATCTCAGTGGTAAAAGCA
AATACACACACAGGCACAAGATATTACTCTATAAGCTTAAATATAGGAAT
AGAAAGATCACAACCACTGCAACAGCTACTGGAAATTTGATGTATATAAA
ATTAACATTGTTTAAAAATATACAAAATAAGGTCAAGGTAAGATATTGTG
TGGTTTGATTTACATTGCTAAGGTATAAGTGATTTGACTTAAATTGTCAA
AGCTTAACAGTATACTAGTATATAACGCCCCCTTTTTAAATTTTTATGGA
CCAACGTCCTAATAGCGGATAGGAATCTTGGTCTTTTTCACTTTTACTTA
AATCCCCGGTCTCCCCCTTTTATTTCACCCCCGCTTCGGGGTCCGTGTCC
TAATAGTCCGTCCCTTTCTATCTTGTCCCCTCTTCCTTTCCTTATCTCAT
CCCCTATTTTTCTCGCACCATTCTCCTTTTCTTTTTTGCCCTCCTTCTAT
TCTTAATATAATTGCTCTTTCTTTCGTCC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTCACCACTTGACATTTATTCTG
CTAGTTCATCTTGATGGATTATGGGGTTTCATCCTTCTATTCAACACACA
CACATACACACACACACACACACACACACACACACTACACACACACACAC
ACTACACACACACACACACACACACTACACACTACACACACACACTCACA
CACACACACATACACACACACACACACACACTACACCCACACCCACACCC
ACACACACTACACCCACACACATACACACCCACACACATACACACACACA
CACACACTACACAAACACACACACTACACACACACACACATACACACACA
CACACACTACACACACACACACACACACACAGGCTGTATCATGTGTAAGC
TGCACACTGTGATTAATCCTATGACTGCTAATGACTTGTGGAGAAAAGAC
TCATATTTAAGGTTACATTAATGGGCCCGGACCTCCCTAATCCTTAATTA
AATATGGCGGCCTTTTTGCTTGCGGCTTTGGTTTTGCTTATCTCGACAAA
AAAAAAAATAGGCAGGGGATACTTTCCCCCGGGGACAAAAAAAAAGTCAA
ATCTTTTTAAAGAATCCTGCGTTACGATCCCTCTGGACAAACCCTATGGA
AAAAATAACCGGACAAAAACGTGAGTTTTTCTCCCCACAGATAACCTCTC
TCTTATAAAACCGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_k05.b1 MSMg01no408_k05.b1 CHROMAT_FILE:
MSMg01no408_k05.b1 PHD_FILE: MSMg01no408_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:40 2005
         (413 letters)



>mm_chr8_54849082_54849894
          Length = 813

 Score =  648 bits (335), Expect = 0.0
 Identities = 347/351 (98%)
 Strand = Plus / Minus

                                                                       
Query: 63  ctgtcaaccaagaatactttatcatctctcaataataaaaggaaaagacttccctagaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ctgtcaaccaagaatactttatcatctctcaataataaaaggaaaagacttccctagaca 754

                                                                       
Query: 123 aacagaaactgaggaagttcatcactagaactgccttacaagatatgctgaagggatttc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aacagaaactgaggaagttcatcactagaactgccttacaagatatgctgaagggatttc 694

                                                                       
Query: 183 ttcaaattgaaatgaaaagatactaaatcataacatgacagcatatgaaagctcaaatct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttcaaattgaaatgaaaagatactaaatcataacatgacagcatatgaaagctcaaatct 634

                                                                       
Query: 243 cagtggtaaaagcaaatacacacacaggcacaagatattactctataagcttaaatatag 302
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 633 cagtggtaaaagcaaatacacacacaggcacaagatattacactataagcttaaatatag 574

                                                                       
Query: 303 gaatagaaagatcacaaccactgcaacagctactggaaatttgatgtatataaaattaac 362
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 573 gaatagaaagatcacaaccactgcaacagttactggaaatttgatgtatataaaattaat 514

                                                              
Query: 363 attgtttaaaaatatacaaaataaggtcaaggtaagatattgtgtggtttg 413
           |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 513 attgtttaaaaatatataaaataaggtcaaggtaagatattgtgtggtttg 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)