BAC Information

Click to search

BAC

Clone NameMSMg01-408P14
Chromosome8 (Build37)
Map Location 80,106,052 - 80,106,452
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714
Downstream geneTmem34, Ednra, EG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408P14.T7 (MSMg01no408_p14.b1)MSMg01-408P14.TJ (MSMg01no408_p14.g1)
ACCAG506568AG506569
length777772
length of high quality
(start - end)		508 (40 - 547)426 (69 - 494)
definitionCHROMAT_FILE: MSMg01no408_p14.b1 PHD_FILE: MSMg01no408_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:09 2005CHROMAT_FILE: MSMg01no408_p14.g1 PHD_FILE: MSMg01no408_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ACAGCACTTCCTTGAACAGCGCACAGTCAGTGAAGAGATCAAGAAGGCAA
TACAAACTCAAGACTCAAAGCAAAAGGCAAACAGACCATACGGACACCTA
TGAGGCCTGGCAAAAGCATTCCCAAGAGGAAAGTTGTAGGCAAACATGCC
CACAGTAAAAACAAACAAACCAAACAGAGGTTCTCAAATAAGTGACGTCG
CACCTTAGAGTCTTGGAGAACTAAGAACAAGTCAGACCCAAAACAGTGGT
TGAAACGAGATTATTAAGATGGAGGCAGACATGAATGAAACAGAAAAGAT
CGAGTGAAGCTGAGTTGATTCTGAGTAGATAAACAAGGCATGGGGACACA
GCTTACCAAAATGTTTGACTAGCATGTCCAAAGCTCGGAGGTTGGTCCCC
AGCAGTTTACACATAAAATGTAATGTCAGCATTGAGGAAATAGATAGGAG
ATTCAGAAATTAAAGATTATCCTCAGATACTAATTTGAGACCAGCCTGGG
ATACATAAGGCCCTGTTCATAAATAAATGTAGCGAAGGACGGAACCCCTG
AACAAATGCGTAGAAAAGGACAATAAGTTGGTCAAATGCGTCCTTTCCCC
CTAGTCAACTTCTGCCCTCTTTATTCTTCCCACGTCCGGTTTTTTCCTAT
AATCCGTTTTCCTCTCCTTCACATATTTCTCCCTCTCCCAATCCTTGTTC
TCTGTTTTGTTTTCCTCCCTCTCCTTN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGAAGAAGC
AGCTCATTACCAGCCAGATAAAGTGCTAGTTAATCGGTCAAGAAAAAAGC
CAAAAGCGGCTGGCGAAAGCCAGCATGCTGTTCAGCCTCCGGGCAGTCGG
CTTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCCGCGTAGTGCGTCAGCC
CTGCGCAGAGAGACAATGCGCAGAGAGACAATGCGCAGAGAGGCAATGCG
CAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGGCATTT
CCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATA
CGTGCAGATTAAAGAACTTGCCGAGTCGGTCCGTATATACGGAACCAATG
CTAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGTACTAACT
CCTGCCGACTGTCAAACGATTGTAAAAGCCGCTCTCCCTAGTATGTCTAA
AAATATGAATGGAGAGCGCTTTGTCTTGATGCTGTATAATCCACTTTCGA
AAAAATTCCCTTGTTTTTTTTTTTTACACTCACAATTGTTTTTTTTTTTT
TGCTTTTTTGCCTTATGAATCTTTTTCTGCTTTCTCCCCTAAATTTTATC
GTTCTTGCCTTTACTCCTTACTTTTTTCTTCTTCCTTTTTTCCCCTCGTC
TACCCTTCTCTTCTCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_p14.b1 MSMg01no408_p14.b1 CHROMAT_FILE:
MSMg01no408_p14.b1 PHD_FILE: MSMg01no408_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:09 2005
         (508 letters)



>mm_chr8_80105545_80106452
          Length = 908

 Score =  760 bits (393), Expect = 0.0
 Identities = 399/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 108 cctatgaggcctggcaaaagcattcccaagaggaaagttgtaggcaaacatgcccacagt 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 cctatgaggcctggcaaaagcattcccaagaggaaagttgtaggcaaacatgcccacagt 849

                                                                       
Query: 168 aaaaacaaacaaaccaaacagaggttctcaaataagtgacgtcgcaccttagagtcttgg 227
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 848 aaaaacaaacaaaccaaacagaggttctcaaataagtgacgtctcaccttagagtcttgg 789

                                                                       
Query: 228 agaactaagaacaagtcagacccaaaacagtggttgaaacgagattattaagatggaggc 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 agaactaagaacaagtcagacccaaaacagtggttgaaacgagattattaagatggaggc 729

                                                                       
Query: 288 agacatgaatgaaacagaaaagatcgagtgaagctgagttgattctgagtagataaacaa 347
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 728 agacatgaatgaaacagaaaagattgagtgaagctgagttgattctgagtagataaacaa 669

                                                                       
Query: 348 ggcatggggacacagcttaccaaaatgtttgactagcatgtccaaagctcggaggttggt 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggcatggggacacagcttaccaaaatgtttgactagcatgtccaaagctcggaggttggt 609

                                                                       
Query: 408 ccccagcagtttacacataaaatgtaatgtcagcattgaggaaatagataggagattcag 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ccccagcagtttacacataaaatgtaatgtcagcattgaggaaatagataggagattcag 549

                                                    
Query: 468 aaattaaagattatcctcagatactaatttgagaccagcct 508
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaattaaagattatcctcagatactaatttgagaccagcct 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |