Query= MSMg01no410_g16.b1 MSMg01no410_g16.b1 CHROMAT_FILE:
MSMg01no410_g16.b1 PHD_FILE: MSMg01no410_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:09 2005
(456 letters)
>mm_chr8_51083863_51084716
Length = 854
Score = 793 bits (410), Expect = 0.0
Identities = 437/454 (96%), Gaps = 16/454 (3%)
Strand = Plus / Minus
Query: 1 aacaagatcttacaagagacactacgtttgagggaatgagagttgatctcatgttaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacaagatcttacaagagacactacgtttgagggaatgagagttgatctcatgttaatgt 386
Query: 61 ggatttggtgtaatcctgtgcctgcagaaggagggattacttagggaacagtgccctctg 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 ggatttggtgtaatcctgtgcctgcagaagg-gggattacttagggaacagtgccctctg 327
Query: 121 tgtgtgcaggctttcatttgacagcatcaagcttgctcaggaaacagaggcatggacaaa 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtgtgcaggctttcatttgac-gcatcaagcttgctcaggaaacagaggcatggacaaa 268
Query: 181 ggaagttcaaacaaattagtttatatttgctcagtattttcatgcaggaaaagtaaatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggaagttcaaacaaattagtttatatttgctcagtattttcatgcaggaaaagtaaatct 208
Query: 241 accaata-------tttttttcatggtaatcagtctctaatggaaaaatgaggtctgatt 293
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 207 accaataaaggacg-------catggtaatcagtctctaatggaaaaatgaggtctgatt 155
Query: 294 aagactcttctgctaatgcacttcagggttagttataaccaaattactgaaaatgttcaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagactcttctgctaatgcacttcagggttagttataaccaaattactgaaaatgttcaa 95
Query: 354 aaagcccttctgtcattatgtgacttactttgtctcatttgtcaaagggcttttgcaacc 413
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 aaagcccttctgtcattacgtgacttactttgtctcatttgtcaaagggcttttgcaacc 35
Query: 414 tttcttgctgagcaaatgtccttttcgcagcctt 447
||||||||||||||||||||||||||||||||||
Sbjct: 34 tttcttgctgagcaaatgtccttttcgcagcctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 854
Length adjustment: 10
Effective length of query: 446
Effective length of database: 844
Effective search space: 376424
Effective search space used: 376424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_g16.g1 MSMg01no410_g16.g1 CHROMAT_FILE:
MSMg01no410_g16.g1 PHD_FILE: MSMg01no410_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:09 2005
(435 letters)
>mm_chr8_50879538_50880373
Length = 836
Score = 828 bits (428), Expect = 0.0
Identities = 434/436 (99%), Gaps = 1/436 (0%)
Strand = Plus / Plus
Query: 1 actcccccaaagcaacttgcagacaagaagaaaacccctgccttttatgagaagtacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcccccaaagcaacttgcagacaagaagaaaacccctgccttttatgagaagtacttt 260
Query: 61 ttgtttttcaattgcagatgtcatttctacagattttcattttggtctgtgggcccctac 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttcttcaattgcagatgtcatttctacagattttcattttggtctgtgggcccctac 320
Query: 121 atatgatttgaaagcagcattgtccatgtgctggctgtggctgggacatttcattggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgatttgaaagcagcattgtccatgtgctggctgtggctgggacatttcattggaga 380
Query: 181 ctgcttcacacaaattaggtgagaactcatctttgtaaaggaatgtctgtcactgacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcttcacacaaattaggtgagaactcatctttgtaaaggaatgtctgtcactgacaat 440
Query: 241 tacgttgatcctcaacctatggccacagtgtgaatgcagaatgtcaacatgtatttctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacgttgatcctcaacctatggccacagtgtgaatgcagaatgtcaacatgtatttctca 500
Query: 301 agttttatgattcaagaagcaaacatcagccttgaaagaataaaataaataaatagaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttttatgattcaagaagcaaacatcagccttgaaagaataaaataaataaatagaaaa 560
Query: 361 ggacaagcaagtct-gtttcccagctgccataattgtgccccattagaaatggcagtgtt 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacaagcaagtcttgtttcccagctgccataattgtgccccattagaaatggcagtgtt 620
Query: 420 tggacttcattagtta 435
||||||||||||||||
Sbjct: 621 tggacttcattagtta 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space: 352302
Effective search space used: 352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
