BAC Information

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BAC

Clone NameMSMg01-410O16
Chromosome8 (Build37)
Map Location 113,892,508 - 113,892,665
singlet/doubletsinglet
Overlap geneFa2h
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl
Downstream geneWdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410O16.T7 (MSMg01no410_o16.b1)MSMg01-410O16.TJ (MSMg01no410_o16.g1)
ACCAG508054AG508055
length792771
length of high quality
(start - end)
158 (78 - 235)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no410_o16.b1 PHD_FILE: MSMg01no410_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:48 2005CHROMAT_FILE: MSMg01no410_o16.g1 PHD_FILE: MSMg01no410_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGG
AATTCACTATTATCCCAAAAGACCTGGCACAACTGTGAGGTTTTTTTTTT
CTCTCTCTCTCTTAATTAAATCATTTGCCCTCCTGGTCTCCCACGGCTCC
CTTGGTAGGTCACAGCAGTGTGTGCAGTGGTGGCCACTCCATGACAGGTT
TGTCATGGCACCTGATACTGCCATGGTGCCCAAGAGCAAGGTTATCTGGT
TTGAAGGAGTCAAGGTGGAGCCCATGAGTCACTCCCTGGCACTGTTGGGG
ATAGCGGGAGACAATATTCCTCCATAGTACAACTGCAAACGGAACGGAAG
AGTGAAAAACTCATCTGAAGGACTAAGACCCACTTCTAATCCCAATCTCT
GTATGAACATACTCCTGCTTATCCATAGTTTTTACTGCGCAATATAACCC
TCTAACTAACTTGGTCCTCATCTTCTTGCATACCCGTTATACTATCCCAT
TGTAACAATGCAACCCCCCTTTCTCTCTTTCATCTCTCCCTTCTCTCCCT
CCCTTTCCTTCCCTTTCCTTTCTCCCCTTTCTCTTCTCCTTTTTCCCCCT
CCCCCCTCTTTTCTTTTCTTTCCCCTCTTCCACCCCTTCTTTCTTTTTCC
TTCTTTTCATCCCCTACATTTTTTTTCTCTCTTCTCCTCCCTCCTTCTCT
CATTCACTTTTTTCTTACTTTTTCCTTATTTCNCCATTCCTTCCACCTTT
TTACCCCCCTTATTCCCCTCCTTTCTTCCTCCCCTCTCTTTT
NCCGATGAAGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGGGGACATAACTCACTCTTCA
CACTTCAAGATCTCTGTTCACACTCTTGTGGGTGGGTGGGTGGTTCAGTA
TAGTTCTGGCTGTCTTGGAACTCACTCTGTAGACCAGGCTGGCCCTGAAC
ATAAAGATCTACCTGCTTCTGCCTCCCCAGTGCTGGGATTACAGGCGTTT
GCCCCCACCACCGTGCACTTTGTCCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTATTTTTATATATATATATATATATATATATAT
ATATATACACTTTTACACCCCCCCACTCATATGAAAAAATATGTATATAT
GTGTGTGCGCCCCTGCGTCTTTATGCCCTTTCGCTGTTCTACCTTGTACC
CCTTCCCCTCCCCTTCCACATTTCTTCCTCTCTCCCTCTCTTCTTCCCTC
TTCACCCCCCTCCCTCCCTCCCCCTTCCTCTTCTCTTATCCCTTCCCCTC
CCTCTCCTTCCCCCCTTCCTCTTTTTCCCTTCTCCCCCCCACTCCCCCTT
CCTTCTTTTCTTTTCCCTTTCTTCCCCTTCTCCTTCCCTTCCCTTCCCCT
TTTTTCCTCCTTTCTTCCTCCCCTTCCTTCCCCTTCCCTCCCTTTTCCCC
CCCTTTTCCTCCCCTTTTCCCCCCTTTTTCCCCCCTCTTTTCTCCTTCCC
CTTCCTTTTTCTCCCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_o16.b1 MSMg01no410_o16.b1 CHROMAT_FILE:
MSMg01no410_o16.b1 PHD_FILE: MSMg01no410_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:48 2005
         (158 letters)



>mm_chr8_113892308_113892865
          Length = 558

 Score =  298 bits (154), Expect = 1e-85
 Identities = 157/158 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaactgtgaggttttttttttctctctctctcttaattaaatcatttgccctcctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaactgtgaggttttttttttctctctctctcttaattaaatcatttgccctcctggt 260

                                                                       
Query: 61  ctcccacggctcccttggtaggtcacagcagtgtgtgcagtggtggccactccatgacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcccacggctcccttggtaggtcacagcagtgtgtgcagtggtggccactccatgacag 320

                                                 
Query: 121 gtttgtcatggcacctgatactgccatggtgcccaaga 158
           ||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gtttgtcatggcacctggtactgccatggtgcccaaga 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space:    82500
Effective search space used:    82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)