BAC Information

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BAC

Clone NameMSMg01-411O15
Chromosome8 (Build37)
Map Location 111,771,942 - 111,933,750
singlet/doubletdoublet
Overlap gene4922502B01Rik, Gm1943, LOC100042829
Upstream geneAtbf1
Downstream genePmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411O15.T7 (MSMg01no411_o15.b1)MSMg01-411O15.TJ (MSMg01no411_o15.g1)
ACCAG508812AG508813
length752752
length of high quality
(start - end)
325 (321 - 645)266 (372 - 637)
definitionCHROMAT_FILE: MSMg01no411_o15.b1 PHD_FILE: MSMg01no411_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:07 2005CHROMAT_FILE: MSMg01no411_o15.g1 PHD_FILE: MSMg01no411_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,771,942 - 111,772,266)(111,933,486 - 111,933,750)
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGG
AATTCTTTGTTCCCTTACAATTATGCATGTTTTCCATGTGACTCCTCACT
TGCCCTCACCCCATCCTTTGAATTCATTTAAATAAAAATAATTTATGTGG
ACATTCCTTCAGTCGGGATTTTCTTTCTCTTTCTTAAAGACATCCATAAC
ACTCAGTTGATGCTTTGCATCCAAACCAAGTCGTTATGCCTTTGCATGTC
ATTAGAGCTTTATAAAGAACAACAGCGACATCTGCATGTGCCGAGGTGCC
AGGAGATAGGAGAATATTTAATACCGAAAACAAAACTCCTCACTAGCTTG
GAGGCTCTTTCTCCCCAGCAGCGCCTGCCACCACTGTGGATAGGAGTAAT
TGTACAGTGTAATCACATCATGTCTCATCTGAATATTCATAGCAGAGACA
AAGCTTTGGAGGATAAGGGAGGAGTGGAGATAATTTAAATATAAGCCAGC
GTCTCATTTCCAAATCAAGTTGTGCAGTTATGCCGCGCACCAGGATTCAA
TATTAAACCAACACCGTTTCACAGTTCGAAAATAGGACACGAAGAAGACG
GAAGGGGCATGGTAAAGAAAGAGCGGCATTACATTCTCCTTCTTGGCTAC
GGACTAAAAAAAAATGGACGGTAACAGAATATAAAATCGTTTAAGCGATA
TTTGAAGAGTCACAATAGTGGCTAACCTGCTGCTGGTTTACCAAGAATGA
AN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCCTCATCTTGCCAGCCAGA
TGGGAGCAAAGCAGGTGCAATCTCTTCAAAGACTCCCTCTCTGGAAATTA
ACCTCCGATCCATTCCAGAGGACGACTGGCAGCTCTCGGGCACTCACTGG
AGTTAAGAAGTTTTAGCAAACTCTACACAGGCATTAAAACAATGTTTGAA
TTAGTGTGGATCACAGTGGCCTAGATTCCTGTGCTCCTGAGGACCCTCTT
GTATCTCTTCCATGTGTGTATATTCTTTGAAGGGCTGCATATGGAGAAGA
CTCGCCAGACTGCAGAGCAGGAAGGAGAATTTAGGTCAATTACCTTTTGA
AGTGGGAGCCCTTTTAACAGCTACTCAAGGTAGTATGCGGCTTGGGAACC
TGTATATAATAAAAAAACGACCTGTGCTATTTCTTTAAATACCACCTTTT
GGTTGCAAGTGATCAAAGTATTCAGTTTGGGTAAGGAAAAAAAAAGATCA
AGAGAATTTTCATCCATGTTTGTTCTGGAATCTATTAAGAAGGATTAGCT
ATGCTATTTACCTCTCTCAGGGTCTGTGCTTGGAAGCTGGTGCCTCCAAT
TCGGTTTCTTCCTGCTGAGCCTCTGGTTTTACCCATAAATTGAAGAGGCA
AGTGGCTTGGAAGTCACCTCAAGATTTCTGATATATATGATACACACTCT
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_o15.b1 MSMg01no411_o15.b1 CHROMAT_FILE:
MSMg01no411_o15.b1 PHD_FILE: MSMg01no411_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:07 2005
         (325 letters)



>mm_chr8_111771742_111772466
          Length = 725

 Score =  598 bits (309), Expect = e-175
 Identities = 321/325 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataccgaaaacaaaactcctcactagcttggaggctctttctccccagcagcgcctgcca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataccgaaaacaaaactccacactagcttggaggctctttctccccagcagcgcctgcca 260

                                                                       
Query: 61  ccactgtggataggagtaattgtacagtgtaatcacatcatgtctcatctgaatattcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccactgtggataggagtaattgtacagtgtaatcacatcatgtctcatctgaatattcat 320

                                                                       
Query: 121 agcagagacaaagctttggaggataagggaggagtggagataatttaaatataagccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 agcagagacaaagctttggaggataagggaggagtggagataatttaaatataagccagt 380

                                                                       
Query: 181 gtctcatttccaaatcaagttgtgcagttatgccgcgcaccaggattcaatattaaacca 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gtctcatttccaaatcaagttgtgcagttatgccgtgcaccaggattcaatattaaacca 440

                                                                       
Query: 241 acaccgtttcacagttcgaaaataggacacgaagaagacggaaggggcatggtaaagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaccgtttcacagttcgaaaataggacacgaagaagacggaaggggcatggtaaagaaa 500

                                    
Query: 301 gagcggcattacattctccttcttg 325
           |||||| ||||||||||||||||||
Sbjct: 501 gagcggtattacattctccttcttg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no411_o15.g1 MSMg01no411_o15.g1 CHROMAT_FILE:
MSMg01no411_o15.g1 PHD_FILE: MSMg01no411_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:07 2005
         (266 letters)



>mm_chr8_111933286_111933951
          Length = 666

 Score =  505 bits (261), Expect = e-147
 Identities = 264/265 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggagaatttaggtcaattaccttttgaagtgggagcccttttaacagctactcaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaggagaatttaggtcaattaccttttgaagtgggagcccttttaacagctactcaaggt 406

                                                                       
Query: 61  agtatgcggcttgggaacctgtatataataaaaaaacgacctgtgctatttctttaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtatgcggcttgggaacctgtatataataaaaaaacgacctgtgctatttctttaaata 346

                                                                       
Query: 121 ccaccttttggttgcaagtgatcaaagtattcagtttgggtaaggaaaaaaaaagatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ccaccttttggttgcaagtgatcaaagtattcagtttgggtaaggaaaaaaaaagatcaa 286

                                                                       
Query: 181 gagaattttcatccatgtttgttctggaatctattaagaaggattagctatgctatttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 285 gagaattttcatccatgtttgttctggaatctattaagaaggattagctatgcaatttac 226

                                    
Query: 241 ctctctcagggtctgtgcttggaag 265
           |||||||||||||||||||||||||
Sbjct: 225 ctctctcagggtctgtgcttggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)