BAC Information

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BAC

Clone NameMSMg01-412B02
Chromosome8 (Build37)
Map Location 112,726,516 - 112,726,799
singlet/doubletsinglet
Overlap genenone
Upstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2
Downstream geneBC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412B02.T7 (MSMg01no412_b02.b1)MSMg01-412B02.TJ (MSMg01no412_b02.g1)
ACCAG508929AG508930
length741716
length of high quality
(start - end)
537 (53 - 589)284 (92 - 375)
definitionCHROMAT_FILE: MSMg01no412_b02.b1 PHD_FILE: MSMg01no412_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:19 2005CHROMAT_FILE: MSMg01no412_b02.g1 PHD_FILE: MSMg01no412_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGGATGTCAAGCACCTAAAGGGCTGGGTTCATAACTG
TACTTGTCCATTGCCCTTCAGTGTTGTCTCTGGGCAGACACAAGCCCTCC
ATCTTCCTGACCTGGCTAGTGTGCCCTGTGCATCTGAGCCAACTGTTCGA
CCACAGAGCTATAAACCAGCCCTCCACAGCATTCTTGGCTTTGCCATTTG
CCGTCTCTAGTACCAACTGGTGAAACTAATTTAGGAATACTTTTTTAAAA
ATGTGAGTGGGGACTTTAAAACATGCAAAACTAGAAACAGCAGCGTCATG
AATGAGTCTCTGAATATTTATCCACCATCCCTGTGTAATTATCACAGTGT
CACCAGAAGCTTTGTATTTTTTTCCAGTGTGTTTTTAAGGCAAATCTAAA
TCTCATATAGTTTGCCCCATACATTCTTTTATATGCAAAATAGCTTTTTT
TCCTTAAATATCTTTCTTTGATATAACCTTGGAAAAACCTTGTACATAGA
CTGAGCAGATCACAATTGACTTATGCCCACTTAATCAGTGAGAGTCAGGG
CCTGTCTGTGACACCGAAACTCAGATTCTGTGAGTTTGGCATGTTGGGTG
GCTGTAAGGAAAATAATTAACCATACTAATTAATTTTATTGATTTTTTTA
TATAATAAAATAAACATTAGATTAACATATTACATTTCCTT
NNCTCTTCCTCNCCCGCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTCAGC
CCAGGGTCAGAGGGGAGAGTGTGGCAAACCTCCCGTTTGGAGCAGTGCTG
ATGACTGCCTACAGAGTTTGTGGTGAGCTCTTCTACTCCCCTGGAGTCAT
CCATCCAGAGCCACAGTCACCCCTCATGGAAGTTTAGAGAACTTTCCTCA
CAGCCCCACATTTCAACACTGCATATAGTATTTGCTAGCACAGTCCAGCC
AACTGGTCCCGAGCCAGGAACGCTGGTGGCTTCTGTCCTTAAAAATCACA
GAGACGGATCTGTTTCCTTCTGCTCCTAAGAGTATGTAGAGCCCTTAGAG
TCTAAGGGTTAGCTTTTACGATGACTTTGGGCCAAGGGTCTTATCCAATG
GGTACGAACCCTGGAATCTTTGTATCTGAAAAAAGTCCCCCCCCCCGTTT
AATGCTTTTGCACCCTTTTTCTTTGTTTTCCCTCACCGTGTTTTGTTATC
CCCTGCCCTTTTTCCCAAGTCTTCTCTTTTCTATCCCTTTATTCCCTTTA
TTCTTTCCGTTATTTTCCCCCTGTTTATTTATTCCCCTCCCTTTTTTTTT
AGTTTTCCCTTCTTTATCCAACATTCTCCCTTTCGCCCCGTTTTTCCCTT
CCCCACCTTCCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_b02.g1 MSMg01no412_b02.g1 CHROMAT_FILE:
MSMg01no412_b02.g1 PHD_FILE: MSMg01no412_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:19 2005
         (284 letters)



>mm_chr8_112726316_112726999
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtcagcccagggtcagaggggagagtgtggcaaacctcccgtttggagcagtgctga 60
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 484 aaagtcagcccagggtcagaggggagagtgtggcaaaccacctgtttggagcagtgctga 425

                                                                       
Query: 61  tgactgcctacagagtttgtggtgagctcttctactcccctggagtcatccatccagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgactgcctacagagtttgtggtgagctcttctactcccctggagtcatccatccagagc 365

                                                                       
Query: 121 cacagtcacccctcatggaagtttagagaactttcctcacagccccacatttcaacactg 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 364 cacagtcacccctcatggaagtttagagaactttcctcacagcccaacatttcaacactg 305

                                                                       
Query: 181 catatagtatttgctagcacagtccagccaactggtcccgagccaggaacgctggtggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catatagtatttgctagcacagtccagccaactggtcccgagccaggaacgctggtggct 245

                                                       
Query: 241 tctgtccttaaaaatcacagagacggatctgtttccttctgctc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tctgtccttaaaaatcacagagacggatctgtttccttctgctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)