BAC Information

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BAC

Clone NameMSMg01-412M08
Chromosome8 (Build37)
Map Location 74,727,673 - 74,727,998
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d
Downstream geneCib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412M08.T7 (MSMg01no412_m08.b1)MSMg01-412M08.TJ (MSMg01no412_m08.g1)
ACCAG509463AG509464
length757761
length of high quality
(start - end)
244 (82 - 325)349 (79 - 427)
definitionCHROMAT_FILE: MSMg01no412_m08.b1 PHD_FILE: MSMg01no412_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:15 2005CHROMAT_FILE: MSMg01no412_m08.g1 PHD_FILE: MSMg01no412_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGACA
CCGCGGAATTCAAGCCTGTGACATAAAAGGGTAAGAGCATAACCTTCACA
TGTTCATAACATGCACACCAAGTCTTAATAAAAAAAATGGATGGCTACCT
GAGAATTGAGACATAAAGGTGGATGGATCCTTGAGGCTCAGTGGCCAGCC
AGCTTACAATACCTGAAGAACTCCAGATCAGTGAGAGATCCTGATTCAAA
ACATAATATTGACACCCACACATATGCACACTCGTGCACCTGCATACACT
GTATACATATACGTATTCCTATATANATGCATACAAAACCTATCATATCA
ATACATATCACAGGGGTGTCTGGCAATCCTCCTACCTCAGGCTGAGTACT
GTGATTAGAGTCATGTGCACCATCATGCCCGGCTCCTGGGGTCTCTGTAG
ACTAACATTCATGCTGTTTGCCTTTAAAAACCTCACCTCTCTCTTCCTCT
GACATCATTCACTGTACCTGATTCCCAGTTGTCTATTTTAACTGAAGTCA
AGCATCTACCTTCTGTGTCTCTTCTCTTCCTTAATATGTTTTAGCGTTTT
TCTACCTTCCCTCACTCCCCCTTTTTCTTTCTTTTCCCTTGTCCCCTTGC
CTTCTTTTTTTTTTTTTTTCTTCCCCTATACCCAACCCTCATCCTCCCCC
GTTACCTACGCTATCCCTTTCTATTATCCCCTTTAAATTATCCCCTCTCC
CCTTTCG
NNNNCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGCCCAAGGATGTTCCAG
GGCCTTTGTTTAGGGCACCCACCTGCTGAAAAAGTAGTCATCCCACCACA
CAATCCAGTCACCCAGAATCTTGCCAGATTGATCACCCAGTGATTAAAGA
CCCTGGGGCTGGAGAGGTGGCTCAAAGCTATCAATAGCACCTGCTGCTCT
TGCAGAGGACCTTGGGTTGGCTTTTAGTAGTCATATGGTGGTGACTCAAC
TGCCTGAACCTCCTATTCCATTTTTTCTGAAACCCTCTTCTGGCTTCCAT
GAGCAACTGCACCAACACACATATACACATTAAAAAATGAAAATAGAGGG
CGTGGTGGCACACGCCTTTAATCCCATCACTCAGGAGGCAGAGGCAGGCG
GATTTCTGAGTTCGTGGCCATTCTGGTCTACAGAGTGAGTTTCATGATAT
TCCCGGCCTATCATAAAAATCCTGTCTCTTAACTTCCCCCCTCTAATTAT
GGACCTATGTCTGGTTGGACCTGCGTCGTTTCAACTCTTTGATCATCCAC
CCCCTTCCCCTATGGTTTTAATCCACCTTCTATTTTTTTTTCCCCACTCT
ATTTTCCCTTTTTTCCTCTCCCCCACTCCTTTTTCTTTTCTACTCTCTCC
CCCCCTCTTTCTTCACTCCCTTTATTCCCCCCTACGCTTCTTATTTTTTT
CCCCGCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_m08.g1 MSMg01no412_m08.g1 CHROMAT_FILE:
MSMg01no412_m08.g1 PHD_FILE: MSMg01no412_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:15 2005
         (349 letters)



>mm_chr8_74727673_74728421
          Length = 749

 Score =  588 bits (304), Expect = e-172
 Identities = 320/332 (96%), Gaps = 12/332 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagagcccaaggatgttccagggcctttgtttagggcacccacctgctgaaaaagtagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caagagcccaaggatgttccagggcctttgtttagggcacccacctgctgaaaaagtagt 267

                                                                       
Query: 61  catcccaccacacaatccagtcacccagaatcttgccagattgatcacccagtgattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 catcccaccacacaatccagtcacccagaatcttgccagattgatcacccagtgattaaa 207

                                                                       
Query: 121 gaccctggggctggagaggtggctcaaagctatcaatagcacctgctgctcttgcagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaccctggggctggagaggtggctcaaagctatcaatagcacctgctgctcttgcagagg 147

                                                                       
Query: 181 accttgggttggcttttagtagtcatatggtggtgactcaactgcctgaacctcctattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 accttgggttggcttttagtagtcatatggtggtgactcaactgcctgaacctcctattc 87

                                                                       
Query: 241 ca------ttttttctgaaaccctcttctggcttccatgagcaactgcaccaacacacat 294
           ||            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  cagcaggc------ctgaaaccctcttctggcttccatgagcaactgcaccaacacacat 33

                                           
Query: 295 atacacattaaaaaatgaaaatagagggcgtg 326
           ||||||||||||||||||||||||||||||||
Sbjct: 32  atacacattaaaaaatgaaaatagagggcgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)