BAC Information

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BAC

Clone NameMSMg01-413D04
Chromosome8 (Build37)
Map Location 106,875,215 - 106,875,573
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3
Downstream geneCmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413D04.T7 (MSMg01no413_d04.b1)MSMg01-413D04.TJ (MSMg01no413_d04.g1)
ACCAG509788AG509789
length738753
length of high quality
(start - end)
375 (66 - 440)401 (68 - 468)
definitionCHROMAT_FILE: MSMg01no413_d04.b1 PHD_FILE: MSMg01no413_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:48 2005CHROMAT_FILE: MSMg01no413_d04.g1 PHD_FILE: MSMg01no413_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGCTGTGTACGCAGTCTTGGCTAGCCTTGTTTGTGACCTTGTGGATTT
GCATGTACTGTTTGGAGGAGATCTCTTGCCTATCTAAGAGGTGGCCTGAG
GATTCGTCCCCGCCCATGTCAGAGTCTCTGTGGGTCAGTCGTAGGAGCGC
GGAGACTTGTGTCCATCCTTGTAGTGATGGAGGTGGTGCCAGTGATGACA
GCATCTGTGTTCAGAGCACACAAAAGTCCCAGCACACAAAAGTCCCATGC
TTAGTGTGCTCCTGCCGAATTGTCTTTTTCTGAAGATGTCCTCTACATAG
CAATAGTGACATTAAACAGGTAACAGCAGGGGTTGGGGGGGTGGGGCGCA
TACACTTTCTATGTACAGAATTGTTGACTGATCCTCATGAGCTGATTAAA
AAAAAAAGCTGCTTCTAGTGTGTGAGGTTTCCAGGTACCTTTTAGTTCCT
CATAAAGTTGCAGACTCTGAGGTGTCTCTTGCTGTCTGCTTTTGTCATCA
TCTGCCCCCTATTTCTCCCTGTCTATGTTTTCAGTTCCATGTTTGCCGGT
CCCCTTGTAACTTGCATGACACGATCGCTGGCGCCCGCCTCCCTATGTTT
CTCTTTTGTTCCCTTTTCTTCTTGCCATACCATTTTCTTTTTGTCTTTCC
TCATTTCTACTGGTATTTCCTTGTCCCCCTCTTTTTTC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAGTAGAGAAAGTTCAAATGGCTGAGAAAACA
CTTAAAGGGATCTTTAAGATCCCTAGACATCAGGGGAATGCAAATCAAAA
TCACTGACATTTTATCTTACACCGATCAGCATGGCTAAGATCAACAAAAC
TCACAGCCCATGCTGGTGGGGATGTGGAATGAGAGGAACACACATCCATT
GCTGGTGGAGTGCACACTTGTCCAGCCATTATGGAAATCAGTGTAGTGGT
TCCTCAGAAAGATGGGAATCTATCTACCTAGAGTTTCATCTATCCCACTC
TAGGCATATACTCAAAGACACTTCATCCTACCACAAAGCACTGGTATAAT
GTTCATTTCTGTCGATTCATAATAGCCAAGGAAACAACCTAGGTGTCTCT
GGAAGAATGGATAAAGAAAAGAGGGCACATTTGCACTATGGAGTGTTATT
TAGCTAGAGACCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGATA
GAGAGAGAGAGGCTATTCACATGATATATTTCTACCTTTTCCTCTTTTTT
CCCCCCCGCTAAACTATACTATTTTTTTTTTATTTTTTCTACTTTTCTCA
CTCCCCCTCCCTTTTTCCCTCTTAGCTTCCCCACGCTCTTTCCTTACTCC
TTTTATTCACTATTTTACACCTCATTCCCATTTTTTTCTCTTCCCCCCCC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_d04.b1 MSMg01no413_d04.b1 CHROMAT_FILE:
MSMg01no413_d04.b1 PHD_FILE: MSMg01no413_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:48 2005
         (375 letters)



>mm_chr8_106874800_106875574
          Length = 775

 Score =  629 bits (325), Expect = 0.0
 Identities = 355/375 (94%), Gaps = 16/375 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcttggctagccttgtttgtgaccttgtggatttgcatgtactgtttggaggagatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gtcttggctagccttgtttgtgaccttgtggatttgcatgtactgtttggaggagatctc 715

                                                                       
Query: 61  ttgcctatctaagaggtggcctgaggattcgtccccgcccatgtcagagtctctgtgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ttgcctatctaagaggtggcctgaggattcgtccccgcccatgtcagagtctctgtgggt 655

                                                                       
Query: 121 cagtcgtaggagcgcggagacttgtgtccatccttgtagtgatggaggtggtgccagtga 180
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cagtcggaggagcgtggagacttgtgtccatccttgtagtgatggaggtggtgccagtga 595

                                                                       
Query: 181 tgacagcatctgtgttcagagcacacaaaagtcccagcacacaaaagtcccatgcttagt 240
           |||||||||||||||||||                |||||||||||||||||||||||||
Sbjct: 594 tgacagcatctgtgttcag----------------agcacacaaaagtcccatgcttagt 551

                                                                       
Query: 241 gtgctcctgccgaattgtctttttctgaagatgtcctctacatagcaatagtgacattaa 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gtgctcctgccgaactgtctttttctgaagatgtcctctacatagcaatagtgacattaa 491

                                                                       
Query: 301 acaggtaacagcaggggttgggggggtggggcgcatacactttctatgtacagaattgtt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 490 acaggtaacagcaggggttgggggggtggggcgcatacactttctatgtagagaattgtt 431

                          
Query: 361 gactgatcctcatga 375
           |||||||||||||||
Sbjct: 430 gactgatcctcatga 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)