MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-413G09
Chromosome	8 (Build37)
Map Location	114,784,807 - 114,785,050
singlet/doublet	singlet
Overlap gene	LOC100042040
Upstream gene	Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498
Downstream gene	Cntnap4, LOC100042061
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rfwd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234736 MGI:2384584
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC547023 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:547023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 485 ESTs, 6 Proteins pseudo : _no_value

name	Mlkl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74568 MGI:1921818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fa2h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338521 MGI:2443327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr59 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319481 MGI:2442115
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Znrf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170737 MGI:2177308
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ldhd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52815 MGI:106428
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22640 MGI:99154
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ctrb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66473 MGI:88559
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bcar1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12927 MGI:108091
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cfdp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23837 MGI:1344403
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem170 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66817 MGI:106426
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chst5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56773 MGI:1931825
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932417I16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234740 MGI:2685024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gabarapl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93739 MGI:1890602
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30947 MGI:1353631
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kars (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:85305 MGI:1934754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Terf2ip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57321 MGI:1929871
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG627828 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627828 MGI:3643578
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 106 ESTs, 42 Proteins

name	LOC672498 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:672498
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs

name	LOC100042040 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042040
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs, 4 Proteins pseudo : _no_value

name	Cntnap4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170571 MGI:2183572
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042061 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042061
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins

name	Rfwd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383539 GeneID:234736 MGI:2384584
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger and WD repeat domain 3 transcript_id : NM_146218.3

name	Mlkl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802525 GeneID:74568 MGI:1921818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mixed lineage kinase domain-like transcript_id : NM_029005.2

name	Fa2h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342560 GeneID:338521 MGI:2443327
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fatty acid 2-hydroxylase transcript_id : NM_178086.2

name	Wdr59 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372339 GeneID:319481 MGI:2442115
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 59 transcript_id : NM_176923.3

name	Znrf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56711336 GeneID:170737 MGI:2177308
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc and ring finger 1 transcript_id : NM_133206.2

name	Ldhd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328378 GeneID:52815 MGI:106428
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lactate dehydrogenase D transcript_id : NM_027570.3

name	Zfp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83404684 GeneID:22640 MGI:99154
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 1 transcript_id : NM_011742.2

name	Zfp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109659837 GeneID:22640 MGI:99154
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 1 transcript_id : NM_001037665.2

name	Ctrb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385031 GeneID:66473 MGI:88559
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chymotrypsinogen B1 transcript_id : NM_025583.1

name	Bcar1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254592 GeneID:12927 MGI:108091
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : breast cancer anti-estrogen resistance 1 transcript_id : NM_009954.2

name	Cfdp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753411 GeneID:23837 MGI:1344403
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : craniofacial development protein 1 transcript_id : NM_011801.1

name	Tmem170 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383256 GeneID:66817 MGI:106426
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 170 transcript_id : NM_025781.2

name	Chst5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110815848 GeneID:56773 MGI:1931825
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 transcript_id : NM_019950.2

name	4932417I16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75677479 GeneID:234740 MGI:2685024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932417I16 gene transcript_id : NM_001033321.1

name	Gabarapl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354357 GeneID:93739 MGI:1890602
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA-A) receptor-associated protein-like 2 transcript_id : NM_026693.3

name	Adat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802291 GeneID:30947 MGI:1353631
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenosine deaminase, tRNA-specific 1 transcript_id : NM_013925.3

name	Kars (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16716380 GeneID:85305 MGI:1934754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lysyl-tRNA synthetase transcript_id : NM_053092.1

name	Terf2ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:15618998 GeneID:57321 MGI:1929871
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : telomeric repeat binding factor 2, interacting protein transcript_id : NM_020584.1

name	EG627828 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259096 GeneID:627828 MGI:3643578
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 95 ESTs, 19 Proteins product : predicted gene, EG627828, transcript variant 1 transcript_id : XM_895041.3

name	EG627828 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259095 GeneID:627828 MGI:3643578
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 106 ESTs, 41 Proteins product : predicted gene, EG627828, transcript variant 5 transcript_id : XM_902467.3

name	LOC672498 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259099 GeneID:672498
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical LOC672498, transcript variant 2 transcript_id : XM_001479965.1

name	LOC672498 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259097 GeneID:672498
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC672498, transcript variant 1 transcript_id : XM_001479960.1

name	Cntnap4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982590 GeneID:170571 MGI:2183572
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : contactin associated protein-like 4 transcript_id : NM_130457.2

name	LOC100042061 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259044 GeneID:100042061
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins product : similar to GDP-mannose 4, 6-dehydratase transcript_id : XM_001477490.1

name	Rfwd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542200 CCDS:CCDS22672.1 GeneID:234736 MGI:2384584
definition	GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : ring finger and WD repeat domain 3 protein_id : NP_666330.2

name	Mlkl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626037 GeneID:74568 MGI:1921818
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : mixed lineage kinase domain-like protein_id : NP_083281.1

name	Fa2h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017399 CCDS:CCDS22674.1 GeneID:338521 MGI:2443327
definition	codon_start : 1 exception : mismatches in translation note : fatty acid hydroxylase domain containing 1 product : fatty acid 2-hydroxylase protein_id : NP_835187.1

name	Wdr59 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892721 CCDS:CCDS22675.1 GeneID:319481 MGI:2442115
definition	codon_start : 1 exception : mismatches in translation product : WD repeat domain 59 protein_id : NP_795897.1

name	Znrf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875354 CCDS:CCDS22676.1 GeneID:170737 MGI:2177308
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : peripheral nerve injury protein nin283; ring finger protein 42 product : zinc ring finger protein 1 protein_id : NP_573469.1

name	Ldhd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328379 CCDS:CCDS22677.1 GeneID:52815 MGI:106428
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO:0008720 - D-lactate dehydrogenase activity [Evidence NAS]; GO:0005515 - protein binding [Evidence IPI] [Evidence IDA] GO_process : GO:0006754 - ATP biosynthesis [Evidence NAS]; GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : D-lactate dehydrogenase protein_id : NP_081846.3

name	Zfp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83404683 CCDS:CCDS22678.1 GeneID:22640 MGI:99154
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : zinc finger protein 1 isoform 1 protein_id : NP_001032754.1

name	Zfp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83404685 GeneID:22640 MGI:99154
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : zinc finger protein 1 isoform 2 protein_id : NP_035872.2

name	Ctrb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385032 CCDS:CCDS22679.1 GeneID:66473 MGI:88559
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : chymotrypsinogen B1 protein_id : NP_079859.1

name	Bcar1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254593 GeneID:12927 MGI:108091
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005925 - focal adhesion [Evidence ISS] [Evidence IDA]; GO:0030027 - lamellipodium [Evidence IDA]; GO:0005624 - membrane fraction [Evidence ISS]; GO:0001726 - ruffle [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004871 - signal transducer activity [Evidence ISS] GO_process : GO:0007015 - actin filament organization [Evidence ISS]; GO:0050853 - B cell receptor signaling pathway [Evidence ISS]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0051301 - cell division [Evidence ISS]; GO:0016477 - cell migration [Evidence IDA] [Evidence ISS]; GO:0008283 - cell proliferation [Evidence ISS]; GO:0007173 - epidermal growth factor receptor signaling pathway [Evidence ISS]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IDA]; GO:0008286 - insulin receptor signaling pathway [Evidence ISS]; GO:0007229 - integrin-mediated signaling pathway [Evidence ISS]; GO:0048011 - nerve growth factor receptor signaling pathway [Evidence ISS]; GO:0048008 - platelet-derived growth factor receptor signaling pathway [Evidence ISS] [Evidence IDA]; GO:0030335 - positive regulation of cell migration [Evidence ISS]; GO:0042981 - regulation of apoptosis [Evidence ISS]; GO:0001558 - regulation of cell growth [Evidence ISS]; GO:0050852 - T cell receptor signaling pathway [Evidence ISS] codon_start : 1 note : v-crk-associated tyrosine kinase substrate; p130 Cas product : breast cancer anti-estrogen resistance 1 protein_id : NP_034084.2

name	Cfdp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753412 CCDS:CCDS22680.1 GeneID:23837 MGI:1344403
definition	GO_component : GO:0005604 - basement membrane [Evidence TAS] GO_process : GO:0006916 - anti-apoptosis [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0042127 - regulation of cell proliferation [Evidence IDA]; GO:0008360 - regulation of cell shape [Evidence IDA] codon_start : 1 product : craniofacial development protein 1 protein_id : NP_035931.1

name	Tmem170 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313306 CCDS:CCDS22681.1 GeneID:66817 MGI:106426
definition	codon_start : 1 product : hypothetical protein LOC66817 protein_id : NP_080057.1

name	Chst5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910284 CCDS:CCDS22682.1 GeneID:56773 MGI:1931825
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0031228 - intrinsic to Golgi membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0001517 - N-acetylglucosamine 6-O-sulfotransferase activity [Evidence IDA]; GO:0008146 - sulfotransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0018146 - keratan sulfate biosynthesis [Evidence IDA]; GO:0006044 - N-acetylglucosamine metabolism [Evidence IDA]; GO:0006790 - sulfur metabolism [Evidence IDA] codon_start : 1 note : I-GlcNAc6ST product : carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 protein_id : NP_064334.1

name	4932417I16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677480 GeneID:234740 MGI:2685024
definition	codon_start : 1 product : hypothetical protein LOC234740 protein_id : NP_001028493.1

name	Gabarapl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542873 GeneID:93739 MGI:1890602
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0000139 - Golgi membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence ISS] codon_start : 1 note : ganglioside expression factor 2; GABA(A) receptor-associated protein like 2 product : gamma-aminobutyric acid (GABA-A) receptor-associated protein-like 2 protein_id : NP_080969.2

name	Adat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304859 CCDS:CCDS22684.1 GeneID:30947 MGI:1353631
definition	GO_function : GO:0008251 - tRNA specific adenosine deaminase activity [Evidence ISS] codon_start : 1 note : adenosine deaminase tRNA-specific 1 product : adenosine deaminase, tRNA-specific 1 protein_id : NP_038953.1

name	Kars (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716381 GeneID:85305 MGI:1934754
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005739 - mitochondrion [Evidence ISS] GO_function : GO:0004824 - lysine-tRNA ligase activity [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0000049 - tRNA binding [Evidence ISS] GO_process : GO:0006430 - lysyl-tRNA aminoacylation [Evidence ISS]; GO:0008033 - tRNA processing [Evidence ISS] codon_start : 1 product : lysyl-tRNA synthetase protein_id : NP_444322.1

name	Terf2ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15618999 GeneID:57321 MGI:1929871
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000781 - chromosome, telomeric region [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043047 - single-stranded telomeric DNA binding [Evidence ISS] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0000723 - telomere maintenance [Evidence IEA] codon_start : 1 product : telomeric repeat binding factor 2, interacting protein protein_id : NP_065609.1

name	EG627828 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82918359 GeneID:627828 MGI:3643578
definition	codon_start : 1 product : similar to heterogeneous nuclear ribonucleoprotein A3, isoform 1 protein_id : XP_900134.1

name	EG627828 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82918363 GeneID:627828 MGI:3643578
definition	codon_start : 1 product : similar to heterogeneous nuclear ribonucleoprotein A3, isoform 5 protein_id : XP_907560.1

name	LOC672498 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259098 GeneID:672498
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001480010.1

name	LOC672498 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259100 GeneID:672498
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001480015.1

name	Cntnap4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982591 GeneID:170571 MGI:2183572
definition	GO_component : GO:0030425 - dendrite [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 note : cell recognition protein CASPR4 product : contactin associated protein 4 protein_id : NP_569724.2

name	LOC100042061 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259045 GeneID:100042061
definition	codon_start : 1 product : similar to GDP-mannose 4, 6-dehydratase protein_id : XP_001477540.1

name	LOC547023 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259094 GeneID:547023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 485 ESTs, 6 Proteins product : similar to ribosomal protein S27a pseudo : _no_value transcript_id : XR_034429.1

name	LOC100042040 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259043 GeneID:100042040
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs, 4 Proteins product : similar to 0610007P22Rik protein pseudo : _no_value transcript_id : XR_033230.1

clone name	MSMg01-342B08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-526P05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-291B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301A15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-370A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266B11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-413G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401E12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-520A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474M02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-389M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501G02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-277O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474G12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-395G20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-050J14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-173B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221L15
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-413G09.T7 (MSMg01no413_g09.b1)	MSMg01-413G09.TJ (MSMg01no413_g09.g1)
ACC	AG509942	AG509943
length	728	736
length of high quality (start - end)	244 (67 - 310)	480 (68 - 547)
definition	CHROMAT_FILE: MSMg01no413_g09.b1 PHD_FILE: MSMg01no413_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:04 2005	CHROMAT_FILE: MSMg01no413_g09.g1 PHD_FILE: MSMg01no413_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:04 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC TCAAGATTACCCAAAAATTTAAAAACTAGTTTCTAAATGTGGTTAGTGAG CAGCCTCCAGTCAACAGCAGAATTTTGTATAAAACCATGGGCTTATGGTG ATTGATTTACACTCGGATTCTTTAAGTACCTAAAAATGCATGCTCTCCTT TCTTTATAGCCATCAGGGGGACATTTAACACTTCACAGCAATTGCTTACT AAATATCAGGTATGGGGATGTTTCAGGAGGGCAGTCTATCCTAAAACAGC ACCACACGCAGCTTTGTTTACATGAGAAGTGTGTTACAGTGAACTTCATG AGCATTTACACCACTTGTAAGATAGAAACTGGGGGCTGGAAAGGTGGCCC AGTGGTTAAAAGCACTTACCAATCTTGTAGAAAATGACCTTGAGGGACTT TCAGTTCCTAGTGTCTACATGGTGGCACATGAACGCTTGTAACTCCAGTT CTAAGGGGTTTAGTGGCCTCTTCTCGCTTCCACATGCTCCTGAACACATG TGGTGCACATAAACTCATGTACACACACTCACACACATACCCACTCTTAC ACACACACTCACTATTCTCTCTTTTCTCCCTCCCCATATCCACCTTATAT ATTTCAATTCTATCCCGAATTTGCTTTACTCTCGGCATTCTACTTTAACC CATGCTTCTTCTCATATCTCTCCCCCCG	ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGG GTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGG ATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCTCAATCT GTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAATT TTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAACACAAG CCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGG CTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTG AAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATG GATCGATTCGCATTCTTCGACATGATAACAACCAGTTGTGCCAGCACCAT TTGTTGAAAATGCTTTCTTTTTTCCACTGGATGGNTTTAGCTCCCTTGTC AAAGATCAAGTGACCATAAGTGGTGTGGGTTCATTTCTGCATCTTCCATT CTATTCCATTTGGTCTAGGTGTTCCACTGAATTTTATCAACTTCCTTTGT TTTTTCTAAGGGGGAGGGCTGGTTGTTTTATTTTTTGATTTAAAATTTTT GCTCGGCGGGGTGGGATTCCCTCTATTCTCCTCTCC
quality values	Open. Hide. 20 20 26 26 41 37 30 28 27 25 22 30 23 30 25 23 18 23 30 37 22 13 16 12 12 8 7 7 6 6 6 6 9 11 11 15 15 19 19 20 22 34 37 43 21 19 16 19 23 24 37 37 23 22 11 11 16 11 11 10 11 11 14 17 11 11 18 28 29 29 46 47 59 48 50 36 36 50 50 50 50 53 57 57 59 59 59 57 57 53 53 53 53 53 68 68 68 68 68 68 68 68 68 68 48 42 41 41 41 41 48 47 47 47 47 47 46 57 57 40 36 40 40 46 48 57 68 68 68 68 68 68 68 57 57 57 57 57 50 57 68 68 68 57 57 57 57 47 27 27 19 19 23 39 22 22 22 39 43 68 68 68 68 68 35 35 17 22 22 42 50 68 57 57 57 57 57 68 59 57 57 57 54 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 57 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 47 44 42 47 59 59 68 68 57 57 57 48 48 57 57 59 57 47 43 43 43 43 46 57 68 68 59 59 42 39 35 39 39 43 43 43 43 43 48 48 59 59 59 59 59 59 48 59 48 48 57 57 57 57 50 53 50 50 50 50 41 30 25 12 12 12 12 19 8 8 8 8 8 13 12 30 27 41 46 46 48 59 59 59 59 59 59 59 59 59 59 59 48 48 48 48 48 53 57 57 57 57 57 43 42 30 30 33 43 59 57 57 54 48 48 48 48 54 44 44 32 32 37 37 39 44 57 43 43 39 43 43 59 44 44 33 33 33 42 42 47 44 47 44 59 43 43 35 32 30 30 30 37 42 37 43 43 43 43 43 42 43 43 32 27 27 27 44 43 52 52 52 50 52 52 52 52 57 59 59 43 38 18 13 13 24 38 50 57 57 57 57 57 57 57 57 38 38 23 27 27 43 44 57 44 38 21 20 20 38 38 43 43 28 30 30 42 42 57 43 43 29 27 27 36 41 43 35 35 36 50 50 42 43 43 35 35 50 50 50 57 50 43 43 44 44 48 57 57 48 39 39 37 37 37 37 36 28 28 30 30 37 36 42 36 28 27 27 27 28 44 59 68 68 68 68 48 48 32 32 32 37 33 33 37 41 37 32 28 23 27 23 31 31 42 42 39 39 30 32 25 18 14 10 10 10 10 12 18 18 24 20 20 18 24 19 21 21 24 22 26 19 17 11 18 14 19 22 24 15 15 12 13 10 10 9 11 11 15 10 10 10 10 10 10 8 8 8 9 9 9 11 13 11 11 14 14 18 18 15 11 11 11 12 12 16 10 10 10 13 10 8 8 12 17 8 8 8 8 10 12 8 8 8 8 8 8 8 8 9 9 8 8 10 8 8 8 14 11 9 9 8 8 6 6 6 8 8 9 9 8 8 8 8 8 8 10 11 11 11 8 8 6 6 8 8 10 11 11 11 16 10 8 8 8 8 10 8 9 10 10 13 10 10 10 10 9 9 14 17 12 10 10 10 11 14 12 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 10 9 9 9 12 12 15 13 11 11	Open. Hide. 6 6 8 15 19 10 12 11 20 20 39 32 37 37 37 37 37 39 39 39 44 33 23 16 14 9 8 8 9 10 10 10 10 12 16 16 26 20 23 26 25 12 11 11 21 21 42 41 25 25 12 9 9 10 12 14 20 13 12 12 16 13 18 27 32 33 33 50 48 53 59 36 35 32 32 36 42 47 50 57 57 57 57 59 50 53 50 68 68 68 68 68 57 57 54 54 54 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 46 46 46 48 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 43 43 31 31 35 43 43 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 43 33 33 12 12 11 15 15 21 15 14 14 32 38 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 59 57 46 54 54 57 54 57 59 59 59 59 59 59 37 37 43 44 57 57 57 57 57 57 43 47 35 35 42 44 54 54 48 57 57 68 48 48 43 43 36 46 46 59 59 59 59 57 57 50 50 50 48 48 48 48 48 59 59 57 57 57 57 43 43 43 43 43 40 43 40 40 39 39 39 39 38 34 34 39 34 34 28 28 28 32 32 20 20 20 32 32 43 43 43 37 37 37 30 30 33 37 37 37 39 25 31 25 25 25 34 34 36 36 36 39 39 37 20 24 16 16 16 21 25 29 32 23 15 3 0 3 12 15 14 22 28 34 32 32 25 20 17 10 10 10 10 10 12 19 19 21 14 12 12 15 18 12 12 10 9 14 14 14 12 12 8 8 8 8 8 11 10 10 10 11 11 15 16 15 22 16 16 17 12 12 15 12 22 16 17 15 15 15 14 14 19 15 18 15 15 13 10 10 10 11 12 10 10 10 10 10 10 9 9 9 15 15 10 8 8 8 10 12 8 10 9 9 9 15 11 10 10 10 13 13 16 15 26 21 19 8 8 8 8 8 9 8 8 8 9 9 8 8 8 8 8 9 9 9 9 8 8 8 10 8 6 8 8 8 9 19 21 29 33 30 20 19 16 9 11 8 8 8 8 8 8 8 8 10 13 14 29 17 10 10 8 8 8 8 8 8 8 8 12 8 9 9 9 9 9 8 8 6 6 8 8 8 8 6 7 10 15 10 10 8 8 8 8 6 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no413_g09.b1 MSMg01no413_g09.b1 CHROMAT_FILE:
MSMg01no413_g09.b1 PHD_FILE: MSMg01no413_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:04 2005
         (244 letters)



>mm_chr8_114784607_114785250
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaaaaactagtttctaaatgtggttagtgagcagcctccagtcaacagcagaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttaaaaactagtttctaaatgtggttagtgagcagcctccagtcaacagcagaatttt 260

                                                                       
Query: 61  gtataaaaccatgggcttatggtgattgatttacactcggattctttaagtacctaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtataaaaccatgggcttatggtgattgatttacactcggattctttaagtacctaaaaa 320

                                                                       
Query: 121 tgcatgctctcctttctttatagccatcagggggacatttaacacttcacagcaattgct 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatgctcccctttctttatagccatcagggggacatttaacacttcacagcaattgct 380

                                                                       
Query: 181 tactaaatatcaggtatggggatgtttcaggagggcagtctatcctaaaacagcaccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactaaatatcaggtatggggatgtttcaggagggcagtctatcctaaaacagcaccaca 440

               
Query: 241 cgca 244
           ||||
Sbjct: 441 cgca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information