BAC Information

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BAC

Clone NameMSMg01-413I21
Chromosome8 (Build37)
Map Location 98,312,848 - 98,499,520
singlet/doubletdoublet
Overlap geneCnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Upstream gene1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413I21.T7 (MSMg01no413_i21.b1)MSMg01-413I21.TJ (MSMg01no413_i21.g1)
ACCAG510062AG510063
length752770
length of high quality
(start - end)		476 (59 - 534)424 (63 - 486)
definitionCHROMAT_FILE: MSMg01no413_i21.b1 PHD_FILE: MSMg01no413_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:16 2005CHROMAT_FILE: MSMg01no413_i21.g1 PHD_FILE: MSMg01no413_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,312,848 - 98,313,323)(98,499,097 - 98,499,520)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTTGTGG
TGGCAAGGTTAAATAACTTTCATTTAAAATGTTAAGGACACTTTTAAAAA
TAATTATGATGTCTTGATCAGTGAAGATAAAAATGCCATCTCTAAATCTT
CCAAAGACAAATCTTCTAAGAGTTTAAATTTAGTAAATAGTAAAACAATC
GGAAACGTTTGAGATCTCTATTTTATCAATATCATCTAACAACTGCAGAG
CACCAGGAGTACACCAAGTCAGGGCTGTGTCTGAGACTGCTTCCGACTCA
GCCTGAGGGTGTGATCAAACTCCCCTCCCTTTAGTGCCTTCCCACAGGAT
ACACTCATTCCCAAGACTCCACTGCCTCACTTGACTCCCACACAACTGTA
CAATCCCACAGTTATACTTCAGGTTGCATCTTGTAGGAATTTAAATGGCT
AATTGAAAGCCAAGGAAGAACTCCAGAAGCGTCAGGCAGTGGTGGCACAT
GATGCCTTTGATCTAAGCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAG
CTCCAGGCGAGCCTGGCCTAGAGTTGAGTTCAAGGAAAGCCATGGCTACA
CGGAGAAACCCTGTCTCAAAAAACCAAAACCCCCAGAAGCCAATGTTGAA
AGTACTCATAATAAAAATTTAGATCCCTTGCAGCCATAAGGTAGAATGAT
CTCTAAGAATTCTAGGCCTAGTCTTGTCTTACTTATTAATGTTCCAACCA
CG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAAGGACAGCCTGGGCTACACAGTAAATTTCTATCACTA
CCTTCTACAGTATATAGTAAGACCCTATCCCAAAAATGCCAAAAGTGACA
ACTGAATAGACAACCTAATTAATGAAAAGAATATATTAATATTTGAGTAT
ACATAAAAAGTGCATAAGATATATTTTGAAAATCAAGCAGACTTTATATG
ACTGAATATATAACATTTGAAAAAGTGCAGTCTGAACACTGTGGTTTATC
ACATCGATTTTTCTGAAATTAAAATCATTCTGCATCCAATCCACCTGCCC
TCTGTACTGCTGACATCAACCACTGAGGTGATGAAGAAAAATCTGCCTTG
TGCTAGCTAGTATCTGGCAAACTAACACAAGTTAATTTGTCAATTAAACT
ATCAGTGTAATAGGGGATGTTACAAACTAACATTAGCAGGTTAAGAGAGG
GGAACTGTATTATTCATAAAGAAAACACAAGTCCACCACAGAAATTCAGA
CATCACCTTAAAGATGAACAGTGGGAAAATAAGTTAAGACAGGGCCTGAA
TGACTCCTATCGTCCGGAAAGAAATATAAAAAAGAAAGGTGCCCATGGTG
GCGAAACCTTTTGAAAAACCCATTATAAAAAAAAGGGGCCCTTTTATTTT
GAACTCTCTTGCCCACCCTTTTTTTTTCTCCCGCGGGTAAGGCCCCCCCG
GGAAAAAAATACACACAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_i21.b1 MSMg01no413_i21.b1 CHROMAT_FILE:
MSMg01no413_i21.b1 PHD_FILE: MSMg01no413_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:16 2005
         (476 letters)



>mm_chr8_98312648_98313523
          Length = 876

 Score =  882 bits (456), Expect = 0.0
 Identities = 471/476 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaataactttcatttaaaatgttaaggacacttttaaaaataattatgatgtcttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ttaaataactttcatttaaaatgttaaggacacttttaaaaataattatgatgtcttgac 260

                                                                       
Query: 61  cagtgaagataaaaatgccatctctaaatcttccaaagacaaatcttctaagagtttaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 cagtgaagataaaaatgccatctctaaatcttccaaagacaaatcttccaagagtttaaa 320

                                                                       
Query: 121 tttagtaaatagtaaaacaatcggaaacgtttgagatctctattttatcaatatcatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagtaaatagtaaaacaatcggaaacgtttgagatctctattttatcaatatcatcta 380

                                                                       
Query: 181 acaactgcagagcaccaggagtacaccaagtcagggctgtgtctgagactgcttccgact 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 acaactgcagagcaccaggagtacaccgagtcagggctgtgtctgagactgcttccgact 440

                                                                       
Query: 241 cagcctgagggtgtgatcaaactcccctccctttagtgccttcccacaggatacactcat 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcctgagggtgtgagcaaactcccctccctttagtgccttcccacaggatacactcat 500

                                                                       
Query: 301 tcccaagactccactgcctcacttgactcccacacaactgtacaatcccacagttatact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccaagactccactgcctcacttgactcccacacaactgtacaatcccacagttatact 560

                                                                       
Query: 361 tcaggttgcatcttgtaggaatttaaatggctaattgaaagccaaggaagaactccagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaggttgcatcttgtaggaatttaaatggctaattgaaagccaaggaagaactccagaa 620

                                                                   
Query: 421 gcgtcaggcagtggtggcacatgatgcctttgatctaagcacttgggaggcagagg 476
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgtcaggcagtggtggcacacgatgcctttgatctaagcacttgggaggcagagg 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_i21.g1 MSMg01no413_i21.g1 CHROMAT_FILE:
MSMg01no413_i21.g1 PHD_FILE: MSMg01no413_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:16 2005
         (424 letters)



>mm_chr8_98498823_98499646
          Length = 824

 Score =  804 bits (416), Expect = 0.0
 Identities = 422/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggacagcctgggctacacagtaaatttctatcactaccttctacagtatatagtaaga 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaggacaacctgggctacacagtaaatttctatcactaccttctacagtatatagtaaga 639

                                                                       
Query: 61  ccctatcccaaaaatgccaaaagtgacaactgaatagacaacctaattaatgaaaagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ccctatcccaaaaatgccaaaagtgacaactgaatagacaacctaattaatgaaaagaat 579

                                                                       
Query: 121 atattaatatttgagtatacataaaaagtgcataagatatattttgaaaatcaagcagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atattaatatttgagtatacataaaaagtgcataagatatattttgaaaatcaagcagac 519

                                                                       
Query: 181 tttatatgactgaatatataacatttgaaaaagtgcagtctgaacactgtggtttatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tttatatgactgaatatataacatttgaaaaagtgcagtctgaacactgtggtttatcac 459

                                                                       
Query: 241 atcgatttttctgaaattaaaatcattctgcatccaatccacctgccctctgtactgctg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 458 atcgatttttctgaaattaaaatcattctgcatccaatccacctgccctctgtattgctg 399

                                                                       
Query: 301 acatcaaccactgaggtgatgaagaaaaatctgccttgtgctagctagtatctggcaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 acatcaaccactgaggtgatgaagaaaaatctgccttgtgctagctagtatctggcaaac 339

                                                                       
Query: 361 taacacaagttaatttgtcaattaaactatcagtgtaataggggatgttacaaactaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 taacacaagttaatttgtcaattaaactatcagtgtaataggggatgttacaaactaaca 279

               
Query: 421 ttag 424
           ||||
Sbjct: 278 ttag 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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