XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGTCCAGTCTCGGCTATATTGTCCTGGGATACACACACGAGACCTTGGTC
ATAAAAAAAATTAAAGAAAACATCCAAACAGCATCGCCACCAACAGTAAA
AACAAACAAACAAACAAAACGGAATGGAACCCTTAGTTCTTTTTGTATCC
ATCACAGGAGCTCCTCCTTGGAGTCTTGGGTCAGGTTAGCACTCCTGCCT
CAAGACTGGCCAGCATTTCTTTTGACTAGTCATTTCCTAGTTCTTTCCTT
GAGCCTCATCAGGGAATTCTGTATTTTCTTTCCTTGGCTTTGTGCTGGCC
CCTGGCTGCCTTACACTATCCATGTCTGCCTCTGTCTCCATCATCCCAAG
TCCATCCTGCCTGACTTAATGGTCTGCCATGATGGTTGATCTACTTCCTA
CTGCTCCACTCACCTCCTCCGTTTGCTGCCCCCATGTAGAAGGCATCCAG
TGCCTTAGAATATTTGAGAAAGCTAAATGCAATGACCAACACATGGATGC
TTTAATGAAGGATGAACTAAAAGAAAAAAAGGTACCATCTGAGCAAATAA
GACAGAAAGACATTGCTCCTCATCATAGTTGTCGCGTGACGTGCCCGCCT
ATTGTGAGATGATAAGNGGGTTCCTTTTCCCTCAATAATGGGCTTACTTC
TTACATGTCTTTAAAGGATTATACACAGTCT

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATGGATCAGGCTGACAGGCATACAGACATGT
CTTTGGGATATTGTCTTGATTGTGTTAACTGGCCTAAGAAGATCTGCCAC
TGTGGGCGGCACCATTCCCTAGTGTATTAAGGCTGTCTTGAGAGTGAAGA
GGGGAGCGAAGCACACGTATGAATGCATCCGTTCATTGTTCCCTGATTAT
GGATGCAGCTGTTTCAAGCTCCTTCTTCCTTGGTTTTTCCAAAGTGATGG
GCTGGTACCTGAAATGGTGAGTGTTTCTCATCAGTTGCTTTGGCAGGTAT
TGTTATCATAGCAACAGGAAATGAAACTAAGACATGTGGTATTCTAGTTT
GTTTTCTATTGCTGTGACTTAAAAAAAAAAATGACCAAAAGCAACATGGG
AAAGAAAGGGATTATTTGCTTACAGGTTATACAGTCTATCACCAGAGGAA
GCCAAGGCAGAAATTCTAACAGGGCAGGTATCTGGATGCAAGTACTGAGG
CAGAGGACTTGGAGTTAATAGCGCTTGTTGGCCTGCTTCCCCCGGTATCG
CTCCTGTTCAACCAGGACCATCCTAATTCTTTTTAAAAATAACAATTTTT
GCTATTTACTCCCGTTGTTTCTGCTCCCTCATCTTCCTTTCTTTCCCCCT
TCACCCCCTATTTTCCACTTCAGCTTCTTCTCTCCCCTTTTTGCCACCAT
ATTCCTCCTCCC

Query= MSMg01no413_k05.b1 MSMg01no413_k05.b1 CHROMAT_FILE:
MSMg01no413_k05.b1 PHD_FILE: MSMg01no413_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:22 2005
         (531 letters)



>mm_chr8_114460005_114460935
          Length = 931

 Score =  830 bits (429), Expect = 0.0
 Identities = 501/549 (91%), Gaps = 38/549 (6%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagtccagtctcggctatattgtcctgggatacacacacgagaccttggtcat 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ggaattcaagtccagtcttggctatattgtcctgggatacacacacgagaccttggtcat 239

                                                                       
Query: 64  aaaaaaaattaaagaaaacatccaaacagcatcgccaccaacagtaaaaacaaacaaaca 123
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 240 aaacaaaattaaagaaaacatccaaacagcatcaccaccaacagtaaaaacaaacaaaca 299

                                                                       
Query: 124 aacaaa------------------------acggaatggaacccttagttctttttgtat 159
           ||||||                        ||||||||||||||||||||||||||||||
Sbjct: 300 aacaaacaaacaaacaaacaaacaaacaaaacggaatggaacccttagttctttttgtat 359

                                                                       
Query: 160 ccatcacaggagctcctccttggagtcttgggtcaggttagcactcctgcctcaagactg 219
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccaccacaggagctcctccttggagtcttgggtcaggttagcactcctgcctcaagactg 419

                                                                       
Query: 220 gccagcatttcttttgactagtcatttcctagttctttccttgagcctcatcagggaatt 279
           |||||||||||||||| ||||||| |||||||||||||||||||||||            
Sbjct: 420 gccagcatttcttttgcctagtcacttcctagttctttccttgagcct------------ 467

                                                                       
Query: 280 ctgtattttctttccttggctttgtgctggcccctggctgccttacactatccatgtctg 339
             |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 468 --gtattttctttccttggctttgtgctggcccctggctgtcttacactgtccatgtctg 525

                                                                       
Query: 340 cctctgtctccatcatcccaagtccatcctgcctgacttaatggtctgccatgatggttg 399
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cctctgtctccatcatcctaagtccatcctgcctgacttaatggtctgccatgatggttg 585

                                                                       
Query: 400 atctacttcctactgctccactcacctcctccgtttgctgcccccatgtagaaggcatcc 459
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atctacctcctactgctccactcacctcctccgtttgctgcccccatgtagaaggcatcc 645

                                                                       
Query: 460 agtgccttagaatatttgagaaagctaaatgcaatgaccaacacatggatgctttaatga 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agtgccttagaatatttgagaaagctaaatgcaatgaccaacacatggatgctttaatga 705

                    
Query: 520 aggatgaac 528
           |||||||||
Sbjct: 706 aggatgaac 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)