BAC Information

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BAC

Clone NameMSMg01-414D19
Chromosome8 (Build37)
Map Location 89,483,144 - 89,483,384
singlet/doubletsinglet
Overlap genenone
Upstream genePhkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960
Downstream geneEG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414D19.T7 (MSMg01no414_d19.b1)MSMg01-414D19.TJ (MSMg01no414_d19.g1)
ACCAG510581AG510582
length764772
length of high quality
(start - end)		580 (75 - 654)530 (79 - 608)
definitionCHROMAT_FILE: MSMg01no414_d19.b1 PHD_FILE: MSMg01no414_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:12 2005CHROMAT_FILE: MSMg01no414_d19.g1 PHD_FILE: MSMg01no414_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCAAAGGGTCTCAAAGCAGAATCTGCAAAGAGGAGCCATG
AGGAGCACTGCTTTCTGGCTCCTTCTCTGGCTTGGTCTCTGTCTCATGCT
TAAGTAGCTTCCTTATACAGCCCAGGAGGTCTGCCTAGGAATGCCTGGAC
TGGGCACTCCTACATCAGTTAATAATCATGACAATCTCACACACACAAAC
ACACACTCATACAAACACTCAAGCACACACACACACACAAACACACACTC
ATACAAACACTCAAGCACACACACACACACACACACTCACACACACAAAC
ACACACTCATACAAACACTCAAGCACACACACACAAACACAAGCTCATAC
AAACTCTCAAGGACACACACGCACACACACATACACACACACACACACAC
GCAGGCCACCCAGTTGAGGCTTCCATTCTTAGGTTTCACCAAGTAAATAA
CCAAGGTTAACCAGGACAACCACACATTCACACATTGCTTCCACTCACAC
ACTTGGCCAGGGATCAGTCACACAGCTAAAATGTAAGAAAAAAATATTAA
ACCACATCTCANAAAGACAAGGAATCGGGCTGGGGAGATGATTTCATGGG
TAAAAGCACTTGCTGGGCAAGCCTGAGCTCCAACCCTAAACCACAGTAGA
AGTAAAGAACTGAATCTGAGAATTGAAAAAAACTCACCTCCATGGACTAA
TGTCTTACGAGAAN

NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCCGTCTGGCGGTTCCTCAGAAAATTGGATATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
AAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATTAGATACAATT
TCCTAAACACATGAAACTCAAGAAAAATGAAGAATGAAGGGTGGAACCTA
TGCGCCTCCTTAAAAGAGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_d19.b1 MSMg01no414_d19.b1 CHROMAT_FILE:
MSMg01no414_d19.b1 PHD_FILE: MSMg01no414_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:12 2005
         (580 letters)



>mm_chr8_89482565_89483543
          Length = 979

 Score =  381 bits (197), Expect = e-110
 Identities = 230/242 (95%), Gaps = 3/242 (1%)
 Strand = Plus / Minus

                                                                       
Query: 341 acacacgcaca--cacacatacacacacacacacacacgcaggccacccagttgaggctt 398
           ||||| |||||  || ||| |||| || |||||||||| |||||||||||||||||||||
Sbjct: 820 acacaagcacatgcatacaaacactcaaacacacacacacaggccacccagttgaggctt 761

                                                                       
Query: 399 ccattcttaggtttcaccaagtaaataaccaaggttaaccaggacaaccacacattcaca 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ccattcttaggtttcaccaagtaaataaccaaggttaaccaggacaaccacacattcaca 701

                                                                       
Query: 459 cattgcttccactcacacacttggccagggatcagtcacacagctaaaatgtaagaaaaa 518
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 700 cattgcttccactcacacacttggccagggatcagtcacacagctaagatgtaagaaaaa 641

                                                                       
Query: 519 aatattaaaccacatctcanaaagacaaggaatcgggctggggagatgatttcatgggta 578
           | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 640 a-tattaaaccacatctcaaaaagacaaggaatcaggctggggagatgatttcatgggta 582

             
Query: 579 aa 580
           ||
Sbjct: 581 aa 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space:   552330
Effective search space used:   552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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