BAC Information

Click to search

BAC

Clone NameMSMg01-414M01
Chromosome8 (Build37)
Map Location 47,647,127 - 47,647,549
singlet/doubletsinglet
Overlap geneMlf1ip
Upstream geneSorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1
Downstream geneCcdc111, Casp3, Irf2, Enpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414M01.T7 (MSMg01no414_m01.b1)MSMg01-414M01.TJ (MSMg01no414_m01.g1)
ACCAG510974AG510975
length744785
length of high quality
(start - end)
400 (79 - 478)392 (76 - 467)
definitionCHROMAT_FILE: MSMg01no414_m01.b1 PHD_FILE: MSMg01no414_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:54 2005CHROMAT_FILE: MSMg01no414_m01.g1 PHD_FILE: MSMg01no414_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAAACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTCTTAATTCTCAGATGGAAAACTACCTTTCCTGGG
CCGGTCTGACGGGCAACAGGGAAAGGCACTTGCCACCAAGACTGATGGTC
TGAGCTAATCCTGAGACCTGTAGGCTGCAAGTGAAGAAAGACCCGCACAC
TCAGTTCCATAGATGTGCCCACATATGTCTGTATGTACATACATACACAC
ACAAAATAGATGAATGTAACTGATTTTTTAAAACTTCCTTTACTCTAAAG
CATTTCTGTATTTAAAAAGCCTGCTACAGGATTTTCTTCCCTGTTTGCAT
GTACTCCAGTAAAACACCAAGTGTCTTATAATGACGACAGAGGGCAGAAC
ACTCCCCATACCTTTTTTGTGGTGACCTTGATAGACTCATTTCCACTTGC
TTCATCTTCAGAAGGGTCCAAGCTGTGCCAAACGAAAAGCCGTCAGCATC
TCATCTCACATAACGCTTTCTACCCACTGCTTCTGCGTGAAAACAAGCTG
ATGGTGTCGAGTTTTCTCTCTTCGTGATTCGGTCCTGTCCACCTTGACTG
ACTGTCCGCCTTCACCGTGCGTTCCCTTCATTCTATCTTTACGTGAGCGA
TTACTCTTTGTTCTCTATTGTTTTTATTTTTATTTTTGACCCCTTCCCCA
TATTTACTGCTCCCAACCTTGGGCTTACTGTTTTTGTATTTACC
GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGCCAGCCCGGGGTTATTTAGTA
AGAACTTGTCTCAAAAACAGAAAAGAAAGATTTTTTTTAAAAGAAGTTTT
GTCAGAGGGTAAAATGGGAGGGAGATAACAACTGGATTGTAAAAAAAAAA
GGATAATTAAAAAAAAGTTTTATTGCAAAAGCTTCGACAGAACGTGATAA
GAAATGGTTACTTCCCCCTTTACCTCCTTTTTTTTGGTTGTTTGTTTGTT
TCAAGACACAGTTTCTCTGTGTAAGTGCCCTGGCTGTCCTGGTACTTGTT
TTATAGACTACGCTAGCCTTGAATTATCAGAGTTCCACCTGCTTCTGCCA
TCTGAATGCTGGTGTTAAAAGCATGGGCCACCAGACTCAGCCCTTCTTTT
GAGAGGGAATCAGGAGGTGTGGCTGTCACTTGGTTGCTAGTGAGCTTGCC
TAGCCTTAGGCTTCCATCCCCAGTACAGCGTCTTCAGACAACTAACTCTG
AACAGTGTTGCTGCGAATCTGATGGGCAAACGATTGCTATTTTATTTTAT
CTTCCCCCAAACCACCTCTAGAGGTGGCCCATATCCACACCCACACCCCT
AATTGTCCCCTGGAAGGAACTAAGGTTCTAACGCCTAACCCTTGCGCGGG
GGACCCTCCAATCTTAAGAGGGGCCTATTTATTATCATTCTTCGGACACC
CTTGTATCGCGCTCTCTCTTATTTATCACCATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_m01.b1 MSMg01no414_m01.b1 CHROMAT_FILE:
MSMg01no414_m01.b1 PHD_FILE: MSMg01no414_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:54 2005
         (400 letters)



>mm_chr8_47646757_47647556
          Length = 800

 Score =  590 bits (305), Expect = e-173
 Identities = 384/425 (90%), Gaps = 28/425 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaaaactacctttcctgggccggtctgacgggcaacagggaaaggcacttgccacca 60
           ||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct: 793 atggaaaactatctttcctgggccggtctgacgggcagcagagaaaggcacttgccacaa 734

                                                                       
Query: 61  agactgatggtctgag-ctaatcctgagacctgtaggctgcaagtgaagaaagacccgca 119
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agactgatggtctgagtc-aatcctgagacctgtaggctgcaagtgaagaaagacccgca 675

                                                                       
Query: 120 cactcagttccatagatgtgcccacatatgtctgtatgtacatacatacacacaca---- 175
           ||||||||||||| || ||||||||||||||||||||||||| ||| |||||||||    
Sbjct: 674 cactcagttccattgacgtgcccacatatgtctgtatgtacacacacacacacacacaca 615

                                                                       
Query: 176 -------------------aa-atagatgaatgtaactgattttttaaaacttcctttac 215
                              || ||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cacacacacacacagacacaagatagatgaatgtaactgattttttaaaacttcctttac 555

                                                                       
Query: 216 tctaaagcatttctgtattta-aaaagcctgctacaggattttcttccctgtttgcatgt 274
           ||||||||||||||||| ||| |||||||||||| ||||  |||||| ||||||||||||
Sbjct: 554 tctaaagcatttctgta-ttagaaaagcctgctataggacattcttctctgtttgcatgt 496

                                                                       
Query: 275 actccagtaaaacaccaagtgtcttataatgacgacagagggcagaacactccccatacc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 actccagtaaaacaccaagtgtcttataatgacgacagagggcagaacactccccatacc 436

                                                                       
Query: 335 ttttttgtggtgaccttgatagactcatttccacttgcttcatcttcagaagggtccaag 394
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttttttgtgctgaccttgatagactcatttccacttgcttcatcttcagaagggtccaag 376

                
Query: 395 ctgtg 399
           |||||
Sbjct: 375 ctgtg 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)