BAC Information

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BAC

Clone NameMSMg01-416E11
Chromosome8 (Build37)
Map Location 35,129,217 - 35,281,230
singlet/doubletdoublet
Overlap geneDctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66
Upstream geneLOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769
Downstream geneLOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416E11.T7 (MSMg01no416_e11.b1)MSMg01-416E11.TJ (MSMg01no416_e11.g1)
ACCAG512135AG512136
length688711
length of high quality
(start - end)		502 (12 - 513)507 (58 - 564)
definitionCHROMAT_FILE: MSMg01no416_e11.b1 PHD_FILE: MSMg01no416_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:52 2005CHROMAT_FILE: MSMg01no416_e11.g1 PHD_FILE: MSMg01no416_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,129,217 - 35,129,706)(35,280,724 - 35,281,230)
sequence
CTCACTTTTCGGAGAGGATCCGCGGAATTCTGCAGCTTGCATCAGTCAAA
CTGTTCAGCCAAAAATGTCTTCACTTTTTAGAGATCAAGGAAGCAGCTGT
TAAAAATCTGAATCCACACTTAGGAAGCACTAAAACCCAACAACGATAGA
CACAGCCGGGGGGGGGGGGTCGGGGGGGGGGACAGACGACGACTAACAAT
AACAGAGAAGTGCTCTGGGCCGGCCACGGTGGCGGCGGTGCTGAAGCAGC
CCTCCTCCAATGGAGGAGGGATGGCTCAGGATCTGGTTTTGCTCTAGAAG
GTTGATTGAAGCTCGGGGTCCAGTTTCTCCTTTTTATAGATGTGTTTCTG
TCCTTTGATCATGTCAAGCCGTAAGATGTCTCTCTGGTCCTTTCTCTTCT
CTCCTCCTGTCATTTCCTTATCTGTTTCCACAGCTTGGCCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCTCTCTCTCATTTCTAT
CAGTGGAGTTAGTCATGACTTTGTTGAGTTATTTGATTAAGAAAACAACA
TGAGGGCTGGTGAGATGGCTCAGCAGGTATGAAGAACCGACTGTTCTTCC
CAGGGCTAGAGGTCAAATCCCTGTATCTATTGGTGGTTCAAAACATCTTG
TAGGAAGATTAGCCCCCTTTTTTGGGAGGCTGGGAGAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCTGCTTCCTGATCCACCATGCCAATGAGCACACCTACTGGCA
TGGCTCCACCAAGTCTTCTCCGACATGATAGGCTGAAACCCTCAGAAACC
ATCACCCTCCCTCCCTTACGTTGCTTCTGTCGAGTTTTCTGCTCACCATG
ATGCAGAAGCAGCCGATGCCCCTAGGTAATATCATTATTATAAGTTTTTA
AAATGAGAAAGATATTTGTATAGGGGGCGGGGGGAACATGGAAACAAGAC
AGGTATATAAAGAATATTTGTTCCATTTTGGACATCGTGGGATAAAACTG
AGGTCCTGATGAACACCTGCCTGGAAATGTATCGGGAATAATGAGGAAGG
CAGAGAGGGCTGATGCCGTGTATGACCCATGCAGCTTGGGTCCTGGGACC
ATGGCTAGAGGCAGAGGGAATGGAGGAAAGACAGACAGACAGACGGATGG
ACTCACGCATGCGCGTGTGCACACAAACACACACACAGGCGTGCACACAC
ATATACTGAAGCTGAGACCAGGTTAGGTTTTCTAACTGCTCCTACCCAGA
ACCTCATGTTTATTATATGCACCAGGAGGAGGGGTTAGCCGGATCCAGCA
GTAAATCTCTGTAGGCAGCATTACAAGCGATAAATATGCGGGAGCAGGAA
GCCACCATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_e11.b1 MSMg01no416_e11.b1 CHROMAT_FILE:
MSMg01no416_e11.b1 PHD_FILE: MSMg01no416_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:52 2005
         (502 letters)



>mm_chr8_35129005_35129906
          Length = 902

 Score =  940 bits (486), Expect = 0.0
 Identities = 489/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 13  ggaattctgcagcttgcatcagtcaaactgttcagccaaaaatgtcttcactttttagag 72
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggaattctgcagcttgaatcagtcaaactgttcagccaaaaatgtcttcactttttagag 272

                                                                       
Query: 73  atcaaggaagcagctgttaaaaatctgaatccacacttaggaagcactaaaacccaacaa 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atcaaggaagcagctgttaaaaatctgaatccacacttaggaagcactaaaacccaacaa 332

                                                                       
Query: 133 cgatagacacagccggggggggggggtcggggggggggacagacgacgactaacaataac 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cgatagacacagccggggggggggggtcggggggggggacagacgacgactaacaataac 392

                                                                       
Query: 193 agagaagtgctctgggccggccacggtggcggcggtgctgaagcagccctcctccaatgg 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agagaagtgctctgggccggccacggtggcggcggtgctgaagcagccctcctccaatgg 452

                                                                       
Query: 253 aggagggatggctcaggatctggttttgctctagaaggttgattgaagctcggggtccag 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aggagggatggctcaggatctggttttgctctagaaggttgattgaagctcggggtccag 512

                                                                       
Query: 313 tttctcctttttatagatgtgtttctgtcctttgatcatgtcaagccgtaagatgtctct 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tttctcctttttatagatgtgtttctgtcctttgatcatgtcaagccgtaagatgtctct 572

                                                                       
Query: 373 ctggtcctttctcttctctcctcctgtcatttccttatctgtttccacagcttggcctct 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctggtcctttctcttctctcctcctgtcatttccttatctgtttccacagcttggcctct 632

                                                                       
Query: 433 ctctctctctctctctctctctctctctccctctccctctctctctctcatttctatcag 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctctctctctctctctctctctctctctccctctccctctctctctctcatttctatcag 692

                     
Query: 493 tggagttagt 502
           ||||||||||
Sbjct: 693 tggagttagt 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_e11.g1 MSMg01no416_e11.g1 CHROMAT_FILE:
MSMg01no416_e11.g1 PHD_FILE: MSMg01no416_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:52 2005
         (507 letters)



>mm_chr8_35280469_35281375
          Length = 907

 Score =  973 bits (503), Expect = 0.0
 Identities = 506/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgcttcctgatccaccatgccaatgagcacacctactggcatggctccaccaagtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cctgcttcctgatccaccatgccaatgagcacacctactggcatggctccaccaagtctt 703

                                                                       
Query: 61  ctccgacatgataggctgaaaccctcagaaaccatcaccctccctcccttacgttgcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ctccgacatgataggctgaaaccctcagaaaccatcaccctccctcccttacgttgcttc 643

                                                                       
Query: 121 tgtcgagttttctgctcaccatgatgcagaagcagccgatgcccctaggtaatatcatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgtcgagttttctgctcaccatgatgcagaagcagccgatgcccctaggtaatatcatta 583

                                                                       
Query: 181 ttataagtttttaaaatgagaaagatatttgtatagggggcggggggaacatggaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttataagtttttaaaatgagaaagatatttgtatagggggcggggggaacatggaaacaa 523

                                                                       
Query: 241 gacaggtatataaagaatatttgttccattttggacatcgtgggataaaactgaggtcct 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gacaggtacataaagaatatttgttccattttggacatcgtgggataaaactgaggtcct 463

                                                                       
Query: 301 gatgaacacctgcctggaaatgtatcgggaataatgaggaaggcagagagggctgatgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gatgaacacctgcctggaaatgtatcgggaataatgaggaaggcagagagggctgatgcc 403

                                                                       
Query: 361 gtgtatgacccatgcagcttgggtcctgggaccatggctagaggcagagggaatggagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtgtatgacccatgcagcttgggtcctgggaccatggctagaggcagagggaatggagga 343

                                                                       
Query: 421 aagacagacagacagacggatggactcacgcatgcgcgtgtgcacacaaacacacacaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aagacagacagacagacggatggactcacgcatgcgcgtgtgcacacaaacacacacaca 283

                                      
Query: 481 ggcgtgcacacacatatactgaagctg 507
           |||||||||||||||||||||||||||
Sbjct: 282 ggcgtgcacacacatatactgaagctg 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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