BAC Information

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BAC

Clone NameMSMg01-416G24
Chromosome8 (Build37)
Map Location 32,643,101 - 32,643,398
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329
Downstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416G24.T7 (MSMg01no416_g24.b1)MSMg01-416G24.TJ (MSMg01no416_g24.g1)
ACCAG512255AG512256
length550471
length of high quality
(start - end)
427 (15 - 441)300 (74 - 373)
definitionCHROMAT_FILE: MSMg01no416_g24.b1 PHD_FILE: MSMg01no416_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:03 2005CHROMAT_FILE: MSMg01no416_g24.g1 PHD_FILE: MSMg01no416_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCCTATATTCAGAGGATCCGCGGAATTCTCACCTGAGGAATACTGAAT
GGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCT
AAGATCAAAAACTCAGGTGATAGCAGATGCTGGCGAGGATGTGGAGAAAG
GGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCT
GGAAATCAGTATGGCAGTTCCTCAGAAAATTGGACATAGTACTACTGGAA
GACCCCGCAATACCTCTCCTGGGCATATATCCAGAAGAAGTCCCAACCGG
TAAGAAGGACACATGCTCCACTATGTTCATGGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AANATGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAAT
GAATTTATGAAATTTCTAGGCAAATGGATGGACCTGGAGGGCATCATCCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCTTTAAAACCAACATAAAGCTCTAT
TCAAAAAGTTCAGCTATGCTGACCTGCTTTTACAGATCCACTATGCTCAT
TTTCTCTTCTCCCCATCAGCCCATCTCTTGGAAAGAACAACAAAACCTGT
GTAATGATGAAAGAAGGGGAAAAAAAAAAAACAAAGGAAACCAAAATCAC
GTCAGAAGAAACAGAAGAAAACTGAATTCTAATTATATACAGTATGAGAA
TTTATGTAGAANATCCTAAAGATGTCAACCAAACAAACCCCCCAGAGCTC
CCAGGGGACTAAACCACCCAACCCAAAGAGTACCACATGGGAGGGGACCC
CATGGACTTCCAGGCCCACCATAATATTAAGCAAGAAGNCATTTGTCCTG
GGCCATTTAATTAAAGGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_g24.g1 MSMg01no416_g24.g1 CHROMAT_FILE:
MSMg01no416_g24.g1 PHD_FILE: MSMg01no416_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:03 2005
         (300 letters)



>mm_chr8_32642951_32643650
          Length = 700

 Score =  540 bits (279), Expect = e-158
 Identities = 295/302 (97%), Gaps = 6/302 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctttaaaaccaacataaagctctattcaaaaagttcagctatgctgacctgcttttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acctttaaaaccaacataaagctctattcaaaaagttcagctatgctgacctgcttttac 389

                                                                       
Query: 61  agatccactatgctcattttctcttctccccatcagcccatctcttggaaagaacaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agatccactatgctcattttctcttctccccatcagcccatctcttggaaagaacaacaa 329

                                                                       
Query: 121 aacctgtgtaatgatgaaagaaggggaaaaaaaaaaaa--caaaggaaaccaaaatcacg 178
           ||||||||||||||||||||||||||  ||||||||||  ||||||||||||||||||||
Sbjct: 328 aacctgtgtaatgatgaaagaagggg--aaaaaaaaaaaacaaaggaaaccaaaatcacg 271

                                                                       
Query: 179 tcagaagaaacagaagaaaactgaattctaattatatacagtatgagaatttatgtagaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcagaagaaacagaagaaaactgaattctaattatatacagtatgagaatttatgtagaa 211

                                                                       
Query: 239 natcctaaagatgtcaaccaaacaaaccccccagagctcccaggggactaaaccacccaa 298
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 210 aatcctaaagatgtcaaccaaacaaaccccccagagctcccaggg-actaaaccacc-aa 153

             
Query: 299 cc 300
           ||
Sbjct: 152 cc 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)