BAC Information

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BAC

Clone NameMSMg01-416P14
Chromosome8 (Build37)
Map Location 69,838,674 - 69,839,250
singlet/doubletsinglet
Overlap genenone
Upstream geneMarch1, 1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440, LOC665453
Downstream geneNat1, Nat2, LOC100041265, Nat3, Psd3, Sh2d4a, LOC665510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416P14.T7 (MSMg01no416_p14.b1)MSMg01-416P14.TJ (MSMg01no416_p14.g1)
ACCAG512664AG512665
length716733
length of high quality
(start - end)
577 (70 - 646)366 (73 - 438)
definitionCHROMAT_FILE: MSMg01no416_p14.b1 PHD_FILE: MSMg01no416_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:43 2005CHROMAT_FILE: MSMg01no416_p14.g1 PHD_FILE: MSMg01no416_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCGA
CCCTAACTAGAACATTCATATTGTATTCCCTCATTCCAAGGCTCAGGGAC
CACTGTAAGAGTATAAGAGTCAGACATAGTGGATGATTGCAAGGAAAAGA
GATGTTGCACATGTGAACTCATCGAGGCTGTGATAGCATGGACAAGATCT
GTGCAAGGTCAAGCCAGACAAAATCCCAACATGGATTGGAGAGGAAGTAG
TGAAGTTTCACCCTTAGCTGAGGAAGAAGGAACTAACTGATTTCAGTTTT
TAACCTTAAGATTTATGGTCTCTAAATGGCCTGATCACCATGGTATTATC
TTATTTTAAGTACTTCACTTAAAGGATCCTGAGAGACCTTTATAGATAGA
TTTTCTTTCTAGATGATTAAGGATTGGAATTTTCCATTTCTAGAAAAAGT
GTTTGCTGTATTAGCTAACAAACTGCAAGCCAAAGCTCTATTGTTTTTAA
TGACTTTTGAATGTTGAAAGCAAAATTATTTCATTATTACCTCTCTTTTC
TACAATTTGTGGTCATCATTACTTCTTTATTTCTACCTGATGCCAACTAT
TGTCTGCCTGAAGGATTCTTCTTGACATTGTCATAGTGAAAGCCTGTTGT
TGAGTTTGTTTGGTTTTCCCATGTCTGCAAAAGCCTTCCACTTCATTTTT
GGAAAATTAGTTTGTN
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCAATTTTTA
ATGGGGTTATTTGATTTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATA
TGTTGGATATTAGTCCCCTATCTGATTTAAGATAGGTAGAGGTCCTTTCC
CAAGCTGTTGGTGGAGATTTTGTCTTATTAACCCTGTCTTTTGCCTTACA
GAAGCTTTGCAGTTTTATGAGGTCCCATTTGTCAGTTCTCGATCTTACAG
CACAAGCCAATGCTGTTCTATTCAGGAATTTCCCCCCTGTGCCCATATCT
TTGAGGCTTTTCCCTATTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTT
TATGTGGAGTTCCTTGTTCCACTTAAATTTGACCTTAGAACGAGGGAGAT
AGGAATGGATCAATTCGCATTCTTCTACATGATAACTGCCAGTTGTGCCA
GATTCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTC
CCTTGTCGAAGATCAAGTCACTATAGGTGTGTGTGGTTCATTTCTGGGTC
TTCAATTCTATTCCATTGGGCTACATGTCTGTTGCTATACCAGTACCATG
CAGTTATTTTTATGAAAATTGCTCTGTAAGACCACTTTTAGGCACGCATG
GTGATTCCCCCAGAGTTTCTTTTTTCCTTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_p14.b1 MSMg01no416_p14.b1 CHROMAT_FILE:
MSMg01no416_p14.b1 PHD_FILE: MSMg01no416_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:43 2005
         (577 letters)



>mm_chr8_69838474_69839450
          Length = 977

 Score = 1069 bits (553), Expect = 0.0
 Identities = 571/577 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtattccctcattccaaggctcagggaccactgtaagagtataagagtcagacatag 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtgttccctcattccaaggctcagggaccactgtaagagtataagagtcagacatag 260

                                                                       
Query: 61  tggatgattgcaaggaaaagagatgttgcacatgtgaactcatcgaggctgtgatagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatgattgcaaggaaaagagatgttgcacatgtgaactcatcgaggctgtgatagcat 320

                                                                       
Query: 121 ggacaagatctgtgcaaggtcaagccagacaaaatcccaacatggattggagaggaagta 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacaagatctgtgcaaggtcaaaccagacaaaatcccaacatggattggagaggaagta 380

                                                                       
Query: 181 gtgaagtttcacccttagctgaggaagaaggaactaactgatttcagtttttaaccttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaagtttcacccttagctgaggaagaaggaactaactgatttcagtttttaaccttaa 440

                                                                       
Query: 241 gatttatggtctctaaatggcctgatcaccatggtattatcttattttaagtacttcact 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttagggtctctaaatggcctgatcaccatggtattatcttattttaagtacttcact 500

                                                                       
Query: 301 taaaggatcctgagagacctttatagatagattttctttctagatgattaaggattggaa 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 taaaggatcctgagagacctttatagatagattctctttctagatgattaaggattggaa 560

                                                                       
Query: 361 ttttccatttctagaaaaagtgtttgctgtattagctaacaaactgcaagccaaagctct 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 ttttccatttctagaaaaagtgtttgctgtattagctaacaaactgtaagccaaagctct 620

                                                                       
Query: 421 attgtttttaatgacttttgaatgttgaaagcaaaattatttcattattacctctctttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgtttttaatgacttttgaatgttgaaagcaaaattatttcattattacctctctttt 680

                                                                       
Query: 481 ctacaatttgtggtcatcattacttctttatttctacctgatgccaactattgtctgcct 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctacaatttctggtcatcattacttctttatttctacctgatgccaactattgtctgcct 740

                                                
Query: 541 gaaggattcttcttgacattgtcatagtgaaagcctg 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaggattcttcttgacattgtcatagtgaaagcctg 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)