BAC Information

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BAC

Clone NameMSMg01-417I10
Chromosome8 (Build37)
Map Location 3,514,192 - 3,514,560
singlet/doubletsinglet
Overlap geneMcoln1
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358
Downstream genePnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417I10.T7 (MSMg01no417_i10.b1)MSMg01-417I10.TJ (MSMg01no417_i10.g1)
ACCAG513085AG513086
length795777
length of high quality
(start - end)
---375 (73 - 447)
definitionCHROMAT_FILE: MSMg01no417_i10.b1 PHD_FILE: MSMg01no417_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:26 2005CHROMAT_FILE: MSMg01no417_i10.g1 PHD_FILE: MSMg01no417_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTCATTGCGGCGCTAAACGACTCCTATCACAAAGGACCGCGGAATCC
CTTTTACTGAAAGGAGGACTGGGAACTGCATGGTAAAACTCCAGAAGAGT
TTGTTATCCCTCGGGTTTAGGGTGAAGTCTGAATATGTGTGTGGTATCCC
TGGGTTGGATTCTGTTATGTGCCACGAATTGCCATGTGTCGTCTTACCAC
TACGTAAGGGTCTCTGTTGTTGTTGACCGACATTTTACTCGTTACCCTTG
CTTATTCTGATTTTTGTCACTCCCAACCTCACCCCCCTCAAGCCTCCTTT
TTTTTTTTGCCGACCTGCTCACCCTTTGCCGCCTGTAGCTTGGTTGTTTC
TCATCTTCTATCCCTACTTCTTGTCCTCTTGTCCCTGTCCTGCCCTGACC
TTCTTTTCCTTTGCTCCGCTCACTATCCCTCTTTCCCCCCTTTTTTTCAT
CTTTTCGTTCCTACCTTTCCCACTCTCCTTCTCCCTTTCCATCCTCTTTC
CTCTTTTTCTCCTTCCCCTCACACCTTTTTCCGTTCTCTCTTTTCTCCCC
TTTTCTTTCCTACTTTCCCCTTCTTTCTTTTTGTCCCCTATCTCCCTTCC
CTTTTTTCCTTTCTCTCCTTCTTTCCTTTCTTTTCCTTCCCTTTCCTTCC
TTTCCTTTTTCTTACTCGCCCTTCCTTCCTCTTTTTTTTATCCCACCCTT
TTTCTTCCCTCCTTCCCCCTTTTCCCTCCCTTTTTCCCCTCCTTTCTTTA
CCTCCATTTCCTTTCATTACCATCCGTCTTTTTTACCCTCCTCCC
TCGATGATAGTGNGTAGGCCTGGGGGNCGCCTTTCGAACAACTTTAGGTG
AACTATAGATTCCTCCGCAGGATTCTAGATTGAGGAGATGGGAGCCCGAG
GAAGAGCATACTTGTAGAAAGGAACATCCAAAGACTGGGAGGCAGAAAGG
ACCTGGAGAAATAGCAGTGGTGCCAGGAAGTCACAGGGAGAATGTTCGGG
GACTCTGCCTCATTCTGAGGCACTGGCAGTGGATGTGTGCACTCTTTCCC
ACATGGATAGAAGCTCTACCACAGGTACATTACTGTCACCCAGGCCCTAA
GCAGCCACACTGATTCTCTTTGCAACACTTGGATATCACATACACGCAGG
ACCCGTGGATGCAGGAGTTCAGGCCTTATGCCCACTAACTCTGTTACACT
GTTCCAGCTGAGACGCTGGGTTACTAAATACCAGTCTAGGCTTCTGGCCC
GCAGCATAAGGCACTGAACCAATGAGCCTGATACCTGCGGCCACATCCGG
GGATAGGGAAGATTTCTACAGTGAAGCAAGTCTCTAAGCAAAGGTCCAGA
ATTGATATCCCGATCGTTCTCTCCATACTCTCCGCTAGATTCCCAGTTCG
CCCTTTTTTTTCCCAGCTCTATTATTCCACGATCCACCCTTTCTGCTTGA
TTCCGTTAGAAATGTCCTCTTTTTTTTCTCCCTTTCATGCCTCGCGTCCA
TACAAAATATTGTGCTTTTCCCCCCCTATTTTTGCTGTTATTTGTCCCCC
TTTAATTCCCCTCACTTTTTTGTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_i10.g1 MSMg01no417_i10.g1 CHROMAT_FILE:
MSMg01no417_i10.g1 PHD_FILE: MSMg01no417_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:26 2005
         (375 letters)



>mm_chr8_3513992_3514760
          Length = 769

 Score =  659 bits (341), Expect = 0.0
 Identities = 364/375 (97%), Gaps = 6/375 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctagattgaggagatgggagcccgaggaagagcatacttgtagaaaggaacatccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctagattgaggagatgggagcccgaggaagagcatacttgtagaaaggaacatccaaa 260

                                                                       
Query: 61  gactgggaggcagaaaggacctggagaaatagcagtggtgccaggaagtcacagggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgggaggcagaaaggacctggagaaatagcagtggtgccaggaagtcacagggagaa 320

                                                                       
Query: 121 tgttcggggactctgcctcattctgaggcactggcagtggatgtgtgcactctttcccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttcggggactctgcctcattctgaggcactggcagtggatgtgtgcactctttcccac 380

                                                                       
Query: 181 atggatagaagctctaccacaggtacattactgtcacccaggccctaagcagccacactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggatagaagctctaccacaggtacattactgtcacccaggccctaagcagccacactg 440

                                                                       
Query: 241 attctctttgcaacacttggatatcacatacacgcaggacccgtggatgcaggagttcag 300
           | ||||  |||||||||||||||||||      |||||||||||||||||||||||||||
Sbjct: 441 agtctcgctgcaacacttggatatcac------gcaggacccgtggatgcaggagttcag 494

                                                                       
Query: 301 gccttatgcccactaactctgttacactgttccagctgagacgctgggttactaaatacc 360
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 495 gccttatgcccactaactcttttacactgttccagctgagatgctgggttactaaatacc 554

                          
Query: 361 agtctaggcttctgg 375
           |||||||||||||||
Sbjct: 555 agtctaggcttctgg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 769
Length adjustment: 9
Effective length of query: 366
Effective length of database: 760
Effective search space:   278160
Effective search space used:   278160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)