BAC Information

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BAC

Clone NameMSMg01-417M10
Chromosome8 (Build37)
Map Location 38,720,931 - 38,721,110
singlet/doubletsinglet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417M10.T7 (MSMg01no417_m10.b1)MSMg01-417M10.TJ (MSMg01no417_m10.g1)
ACCAG513277AG513278
length805775
length of high quality
(start - end)
180 (72 - 251)240 (78 - 317)
definitionCHROMAT_FILE: MSMg01no417_m10.b1 PHD_FILE: MSMg01no417_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:46 2005CHROMAT_FILE: MSMg01no417_m10.g1 PHD_FILE: MSMg01no417_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGACGGACCGCG
GAATTCTATTATCGCGCAATATTATATCCATCTTCTTCCTCCCAATACCT
CTCAGAACCATCCCCTTCCTTTCCCTTACAACTTGGTAGCATTTTCTCTA
TAAAACCAACTTGTGCTGCCTCAATATTCTTGCATGTGTGACCTCCCTCT
GGAGTCTATTTTACCAAGATCTACACTCTTAGAAAAAAATGACCATACTC
ACAACAGCAAAAAATTACCAATAGTTCCTCAACTAGGAGTACAAGTGGCG
TGTGATTGCTCTCTCTTTTTTTTAATACCGCATGAGCTGGGCTTCCATTG
GTCCTGTGCATGCTGTCATAAGCCCCGTATACTCTTAAGTGTATCATCCT
CTTTTGTATCCAGAATATTCTGTTTGACCGTACTCATCTATTGATCCTAC
ACATTCTTCCTATATCTGTCCTCCACATGATCCCTGATATCTCTTAATAC
ATGTTGCCTTATACACATCACGTCACAATTATCGTCCACCTTTCTTCTCT
TTCCTTCCTCGTTCTCTTTCTTCTATATATCCCCATTCCGCTATCCATTT
TTCATTTCTTCTTGTTCCACTATCCTTCTCCTGTCTGACGTTTCTGTAAT
TTTCTTTTTCCACCATTCTTTCCTTTTATTTTATTCCTCCTTTTTTCTTA
CCTTTCATTCTCCCTTTTCCCTTTCCTTTTATCCTCCCCCTTCGCTTTAC
CATTCTATATCCTTTACAATTCCTAATACCCTTCTTTATTTCAGCGTCTC
TCTCC
NACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATAGTTTCATTAATTTATCTAA
ACAGTATTAATTCATGAACGTTCATCTTTATGTTGAACTGCAGGAAATCT
GCTCAATAGGGTGGGCGGATGCCCAGGAATCATTATATGATGGAATAATG
ATTGGAAAAGGCACATACGCTGCAAGAAGCAATTCTGAGATGAAATTTCT
AAAGGCCCCATGACTCATCTCAGTCATGCAAAAATGGTGGGCTATGTTCA
GGAAAATCCCCTGCATGCCTTTACCCTATCCTACATGGATCCTGACAGTG
AGTGCTCTCTGCTATGACCATGGCCATCAGAGTAATGAACCTGGAAGGCA
AGAAGATATTCAGTTCAGCAGGTCCAAGTAGGTAGTATTGATTCAAAATT
CAAGAGACTGAGCCCCTACCTCAAGTAGTTTATTTTAGGCATATTTAAGC
ATAACACCATTTGGTGAAAACTTTTCTGGTGACAATTAACTCAACTCTGA
GTGTATAACAAAGCATACCATATATCCCCTACAGGAATTAAGTAAACTAA
AGATTACACCTGACTACATTGACATTCTTTCCCAAGTATTCCTGCCCAAT
TTTCTTTATCATTATGTCCTTTAGACTAATTTATAAGCTTTATGACTACA
AGCTCGGGAAGACTTCCTTTGTTGTGCCTCCCGTCCTTCCGTTATTAAGG
GTCCCCTTTCCAACATTGTTACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_m10.b1 MSMg01no417_m10.b1 CHROMAT_FILE:
MSMg01no417_m10.b1 PHD_FILE: MSMg01no417_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:46 2005
         (180 letters)



>mm_chr8_38720731_38721310
          Length = 580

 Score =  348 bits (180), Expect = e-100
 Identities = 180/180 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatatccatcttcttcctcccaatacctctcagaaccatccccttcctttcccttacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttatatccatcttcttcctcccaatacctctcagaaccatccccttcctttcccttacaa 321

                                                                       
Query: 61  cttggtagcattttctctataaaaccaacttgtgctgcctcaatattcttgcatgtgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttggtagcattttctctataaaaccaacttgtgctgcctcaatattcttgcatgtgtga 261

                                                                       
Query: 121 cctccctctggagtctattttaccaagatctacactcttagaaaaaaatgaccatactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctccctctggagtctattttaccaagatctacactcttagaaaaaaatgaccatactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)