BAC Information

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BAC

Clone NameMSMg01-418C20
Chromosome8 (Build37)
Map Location 12,288,355 - 12,288,587
singlet/doubletsinglet
Overlap genenone
Upstream geneCol4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
Downstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418C20.T7 (MSMg01no418_c20.b1)MSMg01-418C20.TJ (MSMg01no418_c20.g1)
ACCAG513578AG513579
length800834
length of high quality
(start - end)
37 (128 - 164)244 (124 - 367)
definitionCHROMAT_FILE: MSMg01no418_c20.b1 PHD_FILE: MSMg01no418_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:18 2005CHROMAT_FILE: MSMg01no418_c20.g1 PHD_FILE: MSMg01no418_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGACAGGACCGCGGAATTC
CTAACTTTTCCCATACCATGAGAAGGTCTTACCCCAGAGGTGCAGGTGAG
AGTAAATCACAGGAATGGTCTAGGTCATTGTCTTTCTGATAACCCGATGC
TCTCCCTATGGTCCTGAACGTGATCGCAGCGCTTACCCGCCAGGGTGTTG
TCGGGCTGTGTACCTGCGCTGGTCATCTCTGATTATGTCTACTCAGATGT
TCACGCTACTTTACTCCAGGATCTTTCCTACACAGCCTGTCTTTTATGAA
TCTCAGTATACTTCCCTTGTTGTATCCTCTTCACCGGGCTGACGTAATTC
TTATTCCCTCCCCACTGAATCCCTTACTCGCGCCTGCTTGATATCCCATG
TACTTTCTTTCCGATTTCTAACTGATCTCTGCTTTTTCTTTGCTCTCCTG
TCCTTCCTTTGATCCGCCTATTATATCATTTACCCCCTCTCCCCCCGTTC
CATATCCCCATCCTTTTCCTCTGTCTTCTCTAAGTCTTTCCTTACCCCCC
TTTTCTTTCCCCATATCCTTTTGCGCATTTTACCCTAACACCTTTCCTTA
TATATCATCCTCCCATTTCTCCCGCTGCCTTCTTTCCCCCATCCTTTTCC
CTTTTTCCCTACTTCTCCGTCTTCCCTACATTACCTCCTTTCGATTCTTC
CTCTACCACCCTTTCCCCTACCCATTCCTTTATTCTTACCTCTTTCTCCT
TTTTTCCCCCCCTTATTCCCTTTCCCTTTACCCACCTTTTTCCTTTCTTT

CCTCCCCCTTCTATTTCTCTCCCGCTCTCNCCGCCGCTCTTTTCCTCGAT
GATAAGANGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCTCAGAAATTCCAAGGATCGATTCCCAGCGTCATCAGAAGA
AATTTTTTTAAGTCTGTTTTATTTTCTACCTCAAATTCAAATGAATCAGA
AATGTCTCTCACCCTGGTTCTTTTTCTCTGCTTGTGGAGTTTCTTTTTAA
TTCAAAAGTATGAAGCCCGAAGGCCTGGGCCACCGCCTCCAAAGGGCAGG
AGCCGAATAATTCTCATTAAGTGGTATTCAAAGTGATTCCTGAATAAGGC
TTCTCTCTGATCTACGATTTTTATAGAGATTTCTTTAAAATCCAAAAGGA
TTTGCAAAGTGGCAATATTTTGTCAAAGCAAGATATGCTTCTTTACAAGC
ATAAAATGCAGTGTGCAACTGTATCCCATCAAATATAAAGTGTAATGCAT
ATAAAATATGAAAATGCATGCCATGTTTCTTTTTTAAAATATTTATTTTT
ATCTTATGAACATATCTGTCTTGCATCGATGTATATGCACCACTTACTAG
CCTGATGCCCAAGGAGGTCACAAAAAAAATACATCAACATTCCCTGGCAA
CTGAGAGTCACAGTATAGTTGTGGAGCTGCACTTGTGTACTGCTTGATAA
CCGTAATCTATTCTCCCCTTGATTGAACAGATATATTGCATTTTATTTTT
CTGAAACAATTCTTCCAGACATTTGACTTAAAAGACCCTAACTACGGCAA
TACGGTAATCCGTCTAATGATACTATGTACAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_c20.g1 MSMg01no418_c20.g1 CHROMAT_FILE:
MSMg01no418_c20.g1 PHD_FILE: MSMg01no418_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:18 2005
         (244 letters)



>mm_chr8_12288155_12288797
          Length = 643

 Score =  400 bits (207), Expect = e-116
 Identities = 228/235 (97%), Gaps = 3/235 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatcgattcccagcgtcatcagaagaaatttttttaagtctgttttattttctacctca 60
           ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 201 ggatcgattcccagcgtaatcagaagaaa-tcttttaagtctgttttattttctacctca 259

                                                                       
Query: 61  aattcaaatgaatcagaaatgtctctcaccctggttctttttctctgcttgtggagtttc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 260 aattcaaatgaatcagaaatgtctctcaccctggttctctttctctgcttgtggagtttc 319

                                                                       
Query: 121 tttttaattcaaaagtatgaagcccgaaggcctgggccaccgcctccaaagggcaggagc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 320 tttttaattcaaaagtatgaagcccgaaggcctgggccaccacctccaaagggcaggagc 379

                                                                  
Query: 181 cgaataattctcattaagtggtattcaaagtgattcctgaata-aggcttctctc 234
           ||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 380 cgaataattctcattaagtggtattcaaagtgattcctgaatatag-cttctctc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)