BAC Information

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BAC

Clone NameMSMg01-418E11
Chromosome8 (Build37)
Map Location 14,654,056 - 14,815,776
singlet/doubletdoublet
Overlap geneDlgap2, C030037F17Rik
Upstream geneRasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, LOC100041140
Downstream geneCln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418E11.T7 (MSMg01no418_e11.b1)MSMg01-418E11.TJ (MSMg01no418_e11.g1)
ACCAG513654AG513655
length740746
length of high quality
(start - end)
246 (74 - 319)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no418_e11.b1 PHD_FILE: MSMg01no418_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:26 2005CHROMAT_FILE: MSMg01no418_e11.g1 PHD_FILE: MSMg01no418_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,815,532 - 14,815,776)(14,654,056 - 14,654,299)
sequence
GGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAACCACTAGCCATTTGAGAGCCAATAAGGAGCTGTAAAATC
TGGTGTTCTGTGGTGTGGAGCACAAATCTCTCATCAATGCAGAGCGTACC
CAGAATGGCAGGTATCACCATCTCCACTCTCTCTGGATGTGCACACCACC
CTCAGAGTCACAGCACTCTCTTAATTAGATCTTTAAGAATAGCAGCATAA
AAGGAATTACAGTAATCAAGCTGGAGACGGCCTAGATGAGAAGAGGAACT
GGAGAAACTGAACTTTGATGTTTTTTTTATGATTTGACATAAAGGATTAT
AGACATTTTGACACTTTAATTAATGTTAGTCCCAAAGCATAAGTATAAAT
CAACCAAGACACCAAAAACACTTCCCACGGGCATTTACACAATGGTCTCC
CTAAAGTTTCAAAACAATTAGGCAGCCACACAAGTTTTGGGGCCACACTG
AGGGTTAGCAAGTAAGATGCCTGTTTAGAATGTGCCAATTACGCAGAAAT
TATAGTGTAGCCAGTACTTTATATATCCCAGACAGGCACAGAATGCGCTG
ACTGCTGCTTTATTGTCCAGACTTTCCTGTCTTCGTCCTATCCGTTTGCT
TATCTTACCTTCTTTGTACCCTTGAATGCGCTGCGAAAAACCATCGATAT
CTGTCATGCTAACATTTTCCATACGCCTTTTGACTTTTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTTCAGAAAAATTCTAAATGAAACACCCAGGAATTAAG
TGGATTACTCTTGACTGAAGTCATTTGCAAACTGAATTTGGTGACAACTT
ACAAAATGTCTCTCGGGTCCCTTCAAAGAGGTAAGCATAATTCAGTCTGT
GCCAGAGACAGCATCCACCCAGAGTAGTGCTCCATCCAGACTGAGACAAA
GCATGTTAGAAGGCTCTACAGAGTTCTGGAAGTTCTGAAAACACTGCCTT
TCCATGTAATCAGAGAATTTTTGTTTTTCCCGGGGGGTACAGCCGCGAAA
ATGAGCTGTCATCAGCTATTCTCATTAGAATATGCAATTGCATATTATCA
AAATGTGTTTGGAATAATAACCAGCATGTATTTCTACATGCTCCAAAACT
GTAAGGCATCAGGCAAGAACTATGTTTTATAAAACTAATGTGAGAAAACC
TCTCATTATACAGTTCACTTTGACTTCAGTCTCCATAGAAACGTGATATT
CAGATACCCCCATATATCCTTGCCTTTGCAATCCTTTGCCTGCCTTGTAC
CTTGTTTTTGTTCACAGACTTAAAGCCTTATGCGATGCACATCGTAACTT
GCGCCTTTTATTATTATTCTTTTCATCCTCTGTATCTTCTCTTGTTGAAT
GTCTTATCCCTATCCTTCTTTTTGTATTCTACCTTTTTTCCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_e11.b1 MSMg01no418_e11.b1 CHROMAT_FILE:
MSMg01no418_e11.b1 PHD_FILE: MSMg01no418_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:26 2005
         (246 letters)



>mm_chr8_14815332_14815977
          Length = 646

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagagccaataaggagctgtaaaatctggtgttctgtggtgtggagcacaaatctctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagagccaataaggagctgtaaaatctggtgttctgtggtgtggagcacaaatctctca 386

                                                                       
Query: 61  tcaatgcagagcgtacccagaatggcaggtatcaccatctccactctctctggatgtgca 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 tcaatgcagagcgtacccagaatggcaggcatcaccatctccactctctctggatgtgca 326

                                                                       
Query: 121 caccaccctcagagtcacagcactctcttaattagatctttaagaatagcagcataaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caccaccctcagagtcacagcactctcttaattagatctttaagaatagcagcataaaag 266

                                                                       
Query: 181 gaattacagtaatcaagctggagacggcctagatgagaagaggaactggagaaactgaac 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 gaattacagtaatcaagctggagacggcctagatgagaaggggaactggagaaactgaac 206

                
Query: 241 tttga 245
           |||||
Sbjct: 205 tttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no418_e11.g1 MSMg01no418_e11.g1 CHROMAT_FILE:
MSMg01no418_e11.g1 PHD_FILE: MSMg01no418_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:26 2005
         (246 letters)



>mm_chr8_14653856_14654501
          Length = 646

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatgaaacacccaggaattaagtggattactcttgactgaagtcatttgcaaactgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatgaaacacccaggaattaagtggattactcttgactgaagtcatttgcaaactgaa 260

                                                                       
Query: 61  tttggtgacaacttacaaaatgtctctcgggtcccttcaaagaggtaagcataattcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggtgacaacttacaaaatgtctctcgggtcccttcaaagaggtaagcataattcagt 320

                                                                       
Query: 121 ctgtgccagagacagcatccacccagagtagtgctccatccagactgagacaaagcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 321 ctgtgccagagacagcatccacccagagtagtgctccatccagactgagacaaagcaggg 380

                                                                       
Query: 181 tagaaggctctacagagttctggaagttctgaaaacactgcctttccatgtaatcagaga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaggctctacagagttctggaagttctgaaaacactgcctttccatgtaatcagaga 440

               
Query: 241 attt 244
           ||||
Sbjct: 441 attt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)