Query= MSMg01no418_j06.b1 MSMg01no418_j06.b1 CHROMAT_FILE:
MSMg01no418_j06.b1 PHD_FILE: MSMg01no418_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:49 2005
(464 letters)
>mm_chr8_77519170_77520033
Length = 864
Score = 837 bits (433), Expect = 0.0
Identities = 458/473 (96%), Gaps = 12/473 (2%)
Strand = Plus / Plus
Query: 4 ggaattcaagagattgcgttttagcacctgttttgtgtttgctaacatttgatgtagttg 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagagaatgggttttagcacctgttttgtgtttgctaacatttgatgtagttg 263
Query: 64 ttttctgatgtgaaaatcaaacctaaatttttgatcttcattaactctcccaatttactt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttctgatgtgaaaatcaaacctaaatttttgatcttcattaactctcccaatttactt 323
Query: 124 tctacccctgagccctcaatttaatttgagacatagtgttcatctaatcttgtatgaatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctacccctgagccctcaatttaatttgagacatagtgttcatctaatcttgtatgaatg 383
Query: 184 ctcctgaactctgctttctttcacactgctgcttgagaccttttccccttccctggtact 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 ctcctgaactctgctttctttcacactgctgcttgagaccttttccccctccctggtact 443
Query: 244 gtctttttcttgtgaggcagccaccatttagggcccatcagtctgcccatcctgggaata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtctttttcttgtgaggcagccaccatttagggcccatcagtctgcccatcctgggaata 503
Query: 304 ttccatagtatttctcaggttctgggctgccctacatattggacttgtgttcagggttca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttccatagtatttctcaggttctgggctgccctacatattggacttgtgttcagggttca 563
Query: 364 ctcacttttcctacaagcatctagtctttgtttgtttgtttgtttgttt--------tta 415
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 564 ctcacttttcctacaagcatctagtctttgtttgtttgtttgtttgtttgtttgttttta 623
Query: 416 agatttatt----atatgtaagtacactgtagctgtcttcagacacaccagaa 464
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agatttatttattatatgtaagtacactgtagctgtcttcagacacaccagaa 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_j06.g1 MSMg01no418_j06.g1 CHROMAT_FILE:
MSMg01no418_j06.g1 PHD_FILE: MSMg01no418_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:49 2005
(490 letters)
>mm_chr8_77714030_77714919
Length = 890
Score = 924 bits (478), Expect = 0.0
Identities = 487/490 (99%)
Strand = Plus / Minus
Query: 1 ttccctcctggaagatggaaatgtggaacaaagaatatcatttgctcccatgtgaacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttccctcctggaagatggaaatgtggaacaaagaatatcatttgctcccatgtgaacaga 631
Query: 61 aaggttgcagaaagatgaacagtcccttactttggagtactacctcattcactattaaaa 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 630 aaggttgcagaaagatgaacagtcccttaccttggagtactacctcattcactattaaaa 571
Query: 121 ctgtgactttaaaatatccaaggtccttcagcggccaatgtgctctcctacctcacaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctgtgactttaaaatatccaaggtccttcagcggccaatgtgctctcctacctcacaccc 511
Query: 181 ctgggaggcaactgaagggcgtgggcagaagtcatctgtctccttaagcatggggaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctgggaggcaactgaagggcgtgggcagaagtcatctgtctccttaagcatggggaaact 451
Query: 241 gatgttcccagagcagtgtaactaaggtggcagaagggtgatccatgccagccactatct 300
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaggctcccagagcagtgtaactaaggtggcagaagggtgatccatgccagccactatct 391
Query: 301 ccatggcaggcctccagtctccggaaaaggggagggagaaaaacttgttcacttgttagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ccatggcaggcctccagtctccggaaaaggggagggagaaaaacttgttcacttgttagt 331
Query: 361 tgagcaaaaacatgtttaaagttaaaaatatatgattatcacccttgagatatgctcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgagcaaaaacatgtttaaagttaaaaatatatgattatcacccttgagatatgctcaag 271
Query: 421 attggaaatgaatgttccatccagctctctcttaataggcggttccattaaaggtcacgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 attggaaatgaatgttccatccagctctctcttaataggcggttccattaaaggtcacgt 211
Query: 481 accaagaggt 490
||||||||||
Sbjct: 210 accaagaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|