BAC Information

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BAC

Clone NameMSMg01-418J06
Chromosome8 (Build37)
Map Location 77,519,373 - 77,714,719
singlet/doubletdoublet
Overlap geneHmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5
Upstream geneIsx
Downstream geneRasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418J06.T7 (MSMg01no418_j06.b1)MSMg01-418J06.TJ (MSMg01no418_j06.g1)
ACCAG513880AG513881
length758745
length of high quality
(start - end)
464 (49 - 512)490 (77 - 566)
definitionCHROMAT_FILE: MSMg01no418_j06.b1 PHD_FILE: MSMg01no418_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:49 2005CHROMAT_FILE: MSMg01no418_j06.g1 PHD_FILE: MSMg01no418_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,519,373 - 77,519,845)(77,714,230 - 77,714,719)
sequence
NNGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGAGATTGCGTTTTAGCACCTGTTTTGTGTTTGCTAACATT
TGATGTAGTTGTTTTCTGATGTGAAAATCAAACCTAAATTTTTGATCTTC
ATTAACTCTCCCAATTTACTTTCTACCCCTGAGCCCTCAATTTAATTTGA
GACATAGTGTTCATCTAATCTTGTATGAATGCTCCTGAACTCTGCTTTCT
TTCACACTGCTGCTTGAGACCTTTTCCCCTTCCCTGGTACTGTCTTTTTC
TTGTGAGGCAGCCACCATTTAGGGCCCATCAGTCTGCCCATCCTGGGAAT
ATTCCATAGTATTTCTCAGGTTCTGGGCTGCCCTACATATTGGACTTGTG
TTCAGGGTTCACTCACTTTTCCTACAAGCATCTAGTCTTTGTTTGTTTGT
TTGTTTGTTTTTAAGATTTATTATATGTAAGTACACTGTAGCTGTCTTCA
GACACACCAGAAGAGGGTGTCAGATCTCATTATGGATGGTTGTGAGCCAC
CATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGGAATCAGGG
CTCTTAACCACTGAGACATCTCACCANGTCCTTGGTCTTTATTTTAAGAA
AGTTCTGGTAGTATCAGTGGGAATCCCAATACAAAAAGCCAGCCCGCCTG
TGTTGACCTGCCTTTCAAAAACATTCCCCAATTTATTGTTTCCAAACCTT
TTTAAATG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCTCCTGGAAGATGGAAATGT
GGAACAAAGAATATCATTTGCTCCCATGTGAACAGAAAGGTTGCAGAAAG
ATGAACAGTCCCTTACTTTGGAGTACTACCTCATTCACTATTAAAACTGT
GACTTTAAAATATCCAAGGTCCTTCAGCGGCCAATGTGCTCTCCTACCTC
ACACCCCTGGGAGGCAACTGAAGGGCGTGGGCAGAAGTCATCTGTCTCCT
TAAGCATGGGGAAACTGATGTTCCCAGAGCAGTGTAACTAAGGTGGCAGA
AGGGTGATCCATGCCAGCCACTATCTCCATGGCAGGCCTCCAGTCTCCGG
AAAAGGGGAGGGAGAAAAACTTGTTCACTTGTTAGTTGAGCAAAAACATG
TTTAAAGTTAAAAATATATGATTATCACCCTTGAGATATGCTCAAGATTG
GAAATGAATGTTCCATCCAGCTCTCTCTTAATAGGCGGTTCCATTAAAGG
TCACGTACCAAGAGGTCGGGGCTCTGTCTTGGTTCCCTTTGGCAACAGAG
GGCTGCCAGCTCCCAATAAGTAACTCAGAAACTGGGCGGGCCCAGAGCTC
TGATTACTATTGCTAGAGGCTTTTTCCGCCCGGAAGCTATCTTAAAATTC
TTTTAAAACCCATTTGGCTTTGGTCCTTTCCCAGAGGAAGGCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_j06.b1 MSMg01no418_j06.b1 CHROMAT_FILE:
MSMg01no418_j06.b1 PHD_FILE: MSMg01no418_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:49 2005
         (464 letters)



>mm_chr8_77519170_77520033
          Length = 864

 Score =  837 bits (433), Expect = 0.0
 Identities = 458/473 (96%), Gaps = 12/473 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagagattgcgttttagcacctgttttgtgtttgctaacatttgatgtagttg 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagagaatgggttttagcacctgttttgtgtttgctaacatttgatgtagttg 263

                                                                       
Query: 64  ttttctgatgtgaaaatcaaacctaaatttttgatcttcattaactctcccaatttactt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttctgatgtgaaaatcaaacctaaatttttgatcttcattaactctcccaatttactt 323

                                                                       
Query: 124 tctacccctgagccctcaatttaatttgagacatagtgttcatctaatcttgtatgaatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctacccctgagccctcaatttaatttgagacatagtgttcatctaatcttgtatgaatg 383

                                                                       
Query: 184 ctcctgaactctgctttctttcacactgctgcttgagaccttttccccttccctggtact 243
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 ctcctgaactctgctttctttcacactgctgcttgagaccttttccccctccctggtact 443

                                                                       
Query: 244 gtctttttcttgtgaggcagccaccatttagggcccatcagtctgcccatcctgggaata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtctttttcttgtgaggcagccaccatttagggcccatcagtctgcccatcctgggaata 503

                                                                       
Query: 304 ttccatagtatttctcaggttctgggctgccctacatattggacttgtgttcagggttca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttccatagtatttctcaggttctgggctgccctacatattggacttgtgttcagggttca 563

                                                                       
Query: 364 ctcacttttcctacaagcatctagtctttgtttgtttgtttgtttgttt--------tta 415
           |||||||||||||||||||||||||||||||||||||||||||||||||        |||
Sbjct: 564 ctcacttttcctacaagcatctagtctttgtttgtttgtttgtttgtttgtttgttttta 623

                                                                
Query: 416 agatttatt----atatgtaagtacactgtagctgtcttcagacacaccagaa 464
           |||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agatttatttattatatgtaagtacactgtagctgtcttcagacacaccagaa 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no418_j06.g1 MSMg01no418_j06.g1 CHROMAT_FILE:
MSMg01no418_j06.g1 PHD_FILE: MSMg01no418_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:49 2005
         (490 letters)



>mm_chr8_77714030_77714919
          Length = 890

 Score =  924 bits (478), Expect = 0.0
 Identities = 487/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccctcctggaagatggaaatgtggaacaaagaatatcatttgctcccatgtgaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttccctcctggaagatggaaatgtggaacaaagaatatcatttgctcccatgtgaacaga 631

                                                                       
Query: 61  aaggttgcagaaagatgaacagtcccttactttggagtactacctcattcactattaaaa 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 630 aaggttgcagaaagatgaacagtcccttaccttggagtactacctcattcactattaaaa 571

                                                                       
Query: 121 ctgtgactttaaaatatccaaggtccttcagcggccaatgtgctctcctacctcacaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctgtgactttaaaatatccaaggtccttcagcggccaatgtgctctcctacctcacaccc 511

                                                                       
Query: 181 ctgggaggcaactgaagggcgtgggcagaagtcatctgtctccttaagcatggggaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctgggaggcaactgaagggcgtgggcagaagtcatctgtctccttaagcatggggaaact 451

                                                                       
Query: 241 gatgttcccagagcagtgtaactaaggtggcagaagggtgatccatgccagccactatct 300
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaggctcccagagcagtgtaactaaggtggcagaagggtgatccatgccagccactatct 391

                                                                       
Query: 301 ccatggcaggcctccagtctccggaaaaggggagggagaaaaacttgttcacttgttagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ccatggcaggcctccagtctccggaaaaggggagggagaaaaacttgttcacttgttagt 331

                                                                       
Query: 361 tgagcaaaaacatgtttaaagttaaaaatatatgattatcacccttgagatatgctcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgagcaaaaacatgtttaaagttaaaaatatatgattatcacccttgagatatgctcaag 271

                                                                       
Query: 421 attggaaatgaatgttccatccagctctctcttaataggcggttccattaaaggtcacgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 attggaaatgaatgttccatccagctctctcttaataggcggttccattaaaggtcacgt 211

                     
Query: 481 accaagaggt 490
           ||||||||||
Sbjct: 210 accaagaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)