BAC Information

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BAC

Clone NameMSMg01-418O16
Chromosome8 (Build37)
Map Location 82,213,216 - 82,213,657
singlet/doubletsinglet
Overlap geneAbce1
Upstream geneSlc10a7, Lsm6, EG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps
Downstream geneAnapc10, LOC100039439, Hhip, LOC546075, Gypa, Frem3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418O16.T7 (MSMg01no418_o16.b1)MSMg01-418O16.TJ (MSMg01no418_o16.g1)
ACCAG514140AG514141
length792746
length of high quality
(start - end)
250 (71 - 320)444 (77 - 520)
definitionCHROMAT_FILE: MSMg01no418_o16.b1 PHD_FILE: MSMg01no418_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:15 2005CHROMAT_FILE: MSMg01no418_o16.g1 PHD_FILE: MSMg01no418_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACAGCTGTTCTGGTTGTCTAGACAAGATCTGTCCAAGATCAAA
GCAGTCAGCATCCCACCATGAGCCCCTCCCCCCTCTAACTAAGGAGTTGC
TGGCCACTGATGGCTGCGGTGAGAGAGAGTCCGTTTACTTCAGGGATGTA
CTCCCTGGTAGTCGGCCAAACTCTGGCTGATGACTCCATCCAAATGCAGA
TATGGACAACACTAATTGGACTAAGTGAATTCTTTTTAAAAGGACATGAG
AACGGTAGGGGACATGGGTAATATTCAGCAGGAGCCAGAGAGATGAAATA
CGAGTGGATATGATCAAAATTCATTGTAGGCATATATGAAATTCTCAAAA
AATCAATTTTAAAATATCACATTAAGAACCCCACCTGGGAGGGAGTATGG
GGAGGGAAATGGGAGGTTCTACCTCCTTGTCCCTTCCTTTCCCCTCCCCT
TTCCCCTCTTTCTTCTCCTCTTCCTTTCCCCTCTTTCCCCCCCCTCTCCT
CTTCCTTTTATCCCTTTCTCTCCCTTTCTTTCCTACTCCCTTTCCCTCTC
CCCCCTCATTCCCCCTTCCTTTTCCCATTTTCCCTTTTTTCCCCTTTCCC
TTCTCTCCTTCTTTTCCGCCCTTTCCTCTTCTTCTCTTTCTCCCCATCGC
ATCCCTTTTTCTGTACCTACTTTTTCTTATTTTTCCCCCGCCCTTTTCCC
CTATTTCTCCCCTGCTCCGCCCTCCCTTTCTCATTTCTTATG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGA
AACTGTGTCTCTAGGGAAAAGGAAAAAAAAAAATGGAGATTGCAACAGAC
CGGGCTTCAGTAAATTTTTTTGATAGGGGTACAATCTTTTGTACAAGCTG
TGAATAGGCATTTCTATCATAAAATAGCCTATGGTACCCTTAAACTGTGT
GATAACTGAAACAAATGCAGTTTTTTAGTCCATAAGTTGTGTGGACTAAT
CATTTATTAAAAAGCACTGGTTTTCCTTCTAATAAGTTTAGGCTACTATT
TGACAGGTGTGAGAGAATTGTTTCTTAACTGTCACATAATATCTTCAAGA
CAAATTTGTCTGATTATAACAAGAATATTTGGAATATAAAGGTTAATTTT
GTTTTTGTTGTATTATCAGGTACAGGTAAAACTACATTTATCAGAATGCT
TGCTGGAAGGCTTAAACCAGATGAAGGAGGTACTGTCATTTAAACATTCC
CTTTTACTCTATCCCACAGCGAAAATGTTAAAGGGTTGGGCAGTTTTTGT
GTTATTGTAATTGTGGAGCTTTTGAAACTTTTATATTTCTGACCCCTTTT
CCCTCTTTATTCCTATTTCCTAAATCCAATTTTCTTTATCTCATAACTCT
CCCTCACTTATCTCATCACATGCCACCTTTCTTCAATTTTCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_o16.g1 MSMg01no418_o16.g1 CHROMAT_FILE:
MSMg01no418_o16.g1 PHD_FILE: MSMg01no418_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:15 2005
         (444 letters)



>mm_chr8_82212966_82213809
          Length = 844

 Score =  808 bits (418), Expect = 0.0
 Identities = 437/444 (98%), Gaps = 2/444 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacagccagggctacacagagaaactgtgtctctagggaaaaggaaaaaaaaaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 692 aggacagccagggctacacagagaaactgtgtctctagggaaaagg--aaaaaaaaatgg 635

                                                                       
Query: 61  agattgcaacagaccgggcttcagtaaatttttttgataggggtacaatcttttgtacaa 120
           ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 634 agattgcaacagatcaggcttcagtaaatatttttgataggggtacaatcttttgtacaa 575

                                                                       
Query: 121 gctgtgaataggcatttctatcataaaatagcctatggtacccttaaactgtgtgataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gctgtgaataggcatttctatcataaaatagcctatggtacccttaaactgtgtgataac 515

                                                                       
Query: 181 tgaaacaaatgcagttttttagtccataagttgtgtggactaatcatttattaaaaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgaaacaaatgcagttttttagtccataagttgtgtggactaatcatttattaaaaagca 455

                                                                       
Query: 241 ctggttttccttctaataagtttaggctactatttgacaggtgtgagagaattgtttctt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctggtattccttctaataagtttaggctactatttgacaggtgtgagagaattgtttctt 395

                                                                       
Query: 301 aactgtcacataatatcttcaagacaaatttgtctgattataacaagaatatttggaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 394 aactgtcacataatatcttcaagacaaatttgtctgattataacaagaatatttggaatg 335

                                                                       
Query: 361 taaaggttaattttgtttttgttgtattatcaggtacaggtaaaactacatttatcagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 taaaggttaattttgtttttgttgtattatcaggtacaggtaaaactacatttatcagaa 275

                                   
Query: 421 tgcttgctggaaggcttaaaccag 444
           ||||||||||||||||||||||||
Sbjct: 274 tgcttgctggaaggcttaaaccag 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)