BAC Information

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BAC

Clone NameMSMg01-419H22
Chromosome8 (Build37)
Map Location 92,753,622 - 92,754,035
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419H22.T7 (MSMg01no419_h22.b1)MSMg01-419H22.TJ (MSMg01no419_h22.g1)
ACCAG514583AG514584
length811788
length of high quality
(start - end)
---414 (64 - 477)
definitionCHROMAT_FILE: MSMg01no419_h22.b1 PHD_FILE: MSMg01no419_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:03 2005CHROMAT_FILE: MSMg01no419_h22.g1 PHD_FILE: MSMg01no419_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAGAACTGCTNCCTNCNNNNANNNNNCCNNNTTCACCAAGACCGCGGAA
NTCCTATTATCCCTGCTTTCCTTGAGACACGGCGTACAATGGCTCCCTTC
TCTCCTTGTGAAAAGACGTGTTTTCTTGTTTAATTAGAATAGACCTCACT
TCCTTTATAAGACAAACAGGGCAGCAGGATGGCAGAGACTACAGGCTCCC
AAAAAGGAGGTGTGCGCATCTCATCTCTGGGCTATCTATGATTGTGTTGT
GGTGGNAGAATGTCCGGCCTATCTGGNANTGGATGCTTGCTTGATAACCC
CCATGCCCCCTTTTTCTCTAATGGCCCAACCCGGCCCCCCTTTTTTTTTT
TTGGAAATGGGGCACCTTGGCTTTAAGCGCGGGAAAAACCAAAACCCNGG
GGCCCTCTTAAACCCCTAAAAAAACCCCAAAGGGCCCCCCCGGGGGCGCC
CTTATAAGGGGAAAAAAAAAAAAAAACCTTTTTTCCATTCCCTTTTTTTC
CCCCCCCCNCNCCGCCTCCCTTCCCCCCCCCCCCCNNCCCTTTTCCCCCT
CCCCCTTTCTTTCTCCCCCCCTTTTTCCTTCCCCCNCCCCCCCCCCCCNN
CNCCCTTCTTTTTCCTTTCCCCCTCCCTTTTCCTNTCCCCCCCTCTTTTT
TTCCCCCCCCCCTCTTCTTTTTTTCTCTTCCCCCTTTTCTCCTCTCCCCC
CCCCTTCCCCCCCCCTTTTTCCCCTTTCCTCTCCCTCCCCCCNCTCTCCT
TTTTTTTCTCCTTCCCCCCCCTTTTTTTCCCCCCCCCCCTCCTCCCCCCT
GTTTGCGTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTCTTGTAGACTGACTGAGTCTTTCCCCATGTTCTG
TATGATATATTAATATTCTTGCTCACCTGCCTATCCACAGGCCAGAGCAG
AGTCAGCAAGAACCATCCCATGCCCAAGGTAAGGAAACAGCAGGATGAGT
TACTAGATAAGCAATTGGATGTAATGTCTGCTACTCAAAGGCTGAGTCAG
GGAGATCACAAGTTCAAGGTTGGCCTGGGCTATAGAGATAGCCCAAAGGC
AGCTTAGGTTACTTTGTGAGACCCTGTGTCATGTTAAGAGAGGGCTGGGG
ATGTAGCTCAGGGATAGAGTGCTTGGCTGCCAAGCAGAGGCTCTGGAATT
AATCCTCAGTATTCAAAACTGAATCTTAGGCAGAAATGCTCTCTGGTGTT
TTGTGGACAAGTTGATTTGATGACACTTTAAAAAGGGAAATACTCGGTAC
TAAGATGGCAATGCTTCCTGACAGTAGCTTCACAAAGTTAGAATTGAGAT
TGAGATTTATAAGGAAAAGGACCTGGACTTGGGCCCCACGGGAGGGCTTC
CCTCCATTCCCCATTTTATTGGGGGAAATAAAAACATGTTTAATACCGAC
CCTTTCCTTTTTTTTGGTTAACCCTTTGTGGGGGAAGAGTTTCTTTAAAG
TGGCGGGGCCCTATTTTATAATGCCCCTCCCTGGCCCCTTTTATCCCCTT
CTTTCACCCGCCATTATTCCCGCTCTGTGCCCTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_h22.g1 MSMg01no419_h22.g1 CHROMAT_FILE:
MSMg01no419_h22.g1 PHD_FILE: MSMg01no419_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:03 2005
         (414 letters)



>mm_chr8_92753422_92754235
          Length = 814

 Score =  777 bits (402), Expect = 0.0
 Identities = 411/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcttgtagactgactgagtctttccccatgttctgtatgatatattaatattcttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcttgtagactgactgagtctttccccatgttctgtatgatatattaatattcttgct 260

                                                                       
Query: 61  cacctgcctatccacaggccagagcagagtcagcaagaaccatcccatgcccaaggtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacctgcctatccacaggccagagcagagtcagcaagaaccatcccatgcccaaggtaag 320

                                                                       
Query: 121 gaaacagcaggatgagttactagataagcaattggatgtaatgtctgctactcaaaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaacagcaggatgagttactagataagcaattggatgtaatgtctgctactcaaaggct 380

                                                                       
Query: 181 gagtcagggagatcacaagttcaaggttggcctgggctatagagatagcccaaaggcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtcagggagatcacaagttcaaggttggcctgggctatagagatagcccaaaggcagc 440

                                                                       
Query: 241 ttaggttactttgtgagaccctgtgtcatgttaagagagggctggggatgtagctcaggg 300
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggttaccaagtgagaccctgtgtcatgttaagagagggctggggatgtagctcaggg 500

                                                                       
Query: 301 atagagtgcttggctgccaagcagaggctctggaattaatcctcagtattcaaaactgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagagtgcttggctgccaagcagaggctctggaattaatcctcagtattcaaaactgaa 560

                                                                 
Query: 361 tcttaggcagaaatgctctctggtgttttgtggacaagttgatttgatgacact 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttaggcagaaatgctctctggtgttttgtggacaagttgatttgatgacact 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)