BAC Information

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BAC

Clone NameMSMg01-419L14
Chromosome8 (Build37)
Map Location 36,481,947 - 36,482,191
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b
Downstream geneThex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419L14.T7 (MSMg01no419_l14.b1)MSMg01-419L14.TJ (MSMg01no419_l14.g1)
ACCAG514758AG514759
length738757
length of high quality
(start - end)
118 (130 - 247)248 (67 - 314)
definitionCHROMAT_FILE: MSMg01no419_l14.b1 PHD_FILE: MSMg01no419_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:21 2005CHROMAT_FILE: MSMg01no419_l14.g1 PHD_FILE: MSMg01no419_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTATTCCTCATGTCCCTCCNNNNNNNNNNNNTTTCTGAACAGCGGNGG
AATNNTCCCNGTTGCCANCAAAAAGGGGNGAGAAGCACCTGAAAAAATGG
TCAGCATCCTTAATCATCTTGCACATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGGTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGTATGTGGAGAAAGAGGAATACTCCTCCATTGCTGGGGG
GATTGTAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTTCTCAG
AAAATTGGACATAGTACTTCCTTATTATCCAGCAATACCTCTCCTGGGCA
TATATCCATAACATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATA
TTCATAGCAGCCTTATTTATAGTAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAACGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCCAA
TGGATGGCCCTGGATGGCATCATCCTGAGTGAGGTAACCCCATCACAAAA
GAACTCACATGATATGTACTCACCGATAAGTGGATATTAGCCCTCAAACT
TATTTTACTCTTGATACCAGATAAAATTTGTGAAATACATGCAACTCCAC
GAAGAATGAAGACCCAAGCGTGGGACCCTTTGCCCCTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTTTGTAGACCAGGTTGGCCTCGAACTCGGAGA
TCGCCTGCCTCCGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCAC
TGCCCTGCTCCAGCTCATTTTTAGACAATGGTTCACACTTTTTCAGTCTT
GAAATGTAAACCCTTTCTGGCTAAGGGATAATGATCTTTCCTAATCTGTA
GGAAATTTTTGAGTGTTGTTATATCAGCACTTGGGTGGGGGCATATTCCT
GGGTTTCATCATAGTTGATAAAAAAAATCCATGATTTAAAAATGTGATAA
CCAGTTTTATGTTACTGTAATAAATCTCCGAGATGATCTGATTAGAGAGA
GAAAACATTCCTTCTGGCTCACTGTTTCAACCAGGGGTCTGATCCTGTTG
CTTTGGGCCTATGGCCTAACAACCCATCCTGATTGGAACACCCCACAAAG
AATACCACACGTCTCAGGACGGAGAAACAAAATGTGAAAGATAGAAGTGT
GGTCCCACAGTTCCCTTCAGGCAGACCCCCAAAGACCTAAAGACCTCCTG
TTGGGTCCCACTTCCTGTGACTTTCACTGCCTTCCATCGGACCAGAACTA
GGTTTTCTCCCCCTACTCCCAGGTCTGTCCCTGGCTTTTAAGAAATTAAA
CCCCGGCCAAAGAAATGGAACAATGTTTCCCCAACCCTCCCCTTTATACG
AATTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_l14.g1 MSMg01no419_l14.g1 CHROMAT_FILE:
MSMg01no419_l14.g1 PHD_FILE: MSMg01no419_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:21 2005
         (248 letters)



>mm_chr8_36481654_36482301
          Length = 648

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggttggcctcgaactcggagatcgcctgcctccgcctcccaagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 actttgtagaccaggttggcctcgaactcggagatcgcctgcctccgcctcccaagtgct 479

                                                                       
Query: 61  gggattaaaggcgtgcgccaccactgccctgctccagctcatttttagacaatggttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gggattaaaggcgtgcgccaccactgccctgctccagctcatttttagacaatggttcac 419

                                                                       
Query: 121 actttttcagtcttgaaatgtaaaccctttctggctaagggataatgatctttcctaatc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 418 actttttcagtcttgaaatgtaaaccctttctggctaagggataatgatctttcctaaac 359

                                                                       
Query: 181 tgtaggaaatttttgagtgttgttatatcagcacttgggtgggggcatattcctgggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtaggaaatttttgagtgttgttatatcagcacttgggtgggggcatattcctgggttt 299

                
Query: 241 catca 245
           |||||
Sbjct: 298 catca 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)