Query= MSMg01no419_o23.b1 MSMg01no419_o23.b1 CHROMAT_FILE:
MSMg01no419_o23.b1 PHD_FILE: MSMg01no419_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:37 2005
(336 letters)
>mm_chr8_34025988_34026723
Length = 736
Score = 642 bits (332), Expect = 0.0
Identities = 335/336 (99%)
Strand = Plus / Minus
Query: 1 atgagaacaaagcaattttttctgtttagtaaatcttcttagcacaaatattttttagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atgagaacaaagcaattttttctgtttagtaaatcttcttagcacaaatattttttagac 342
Query: 61 ctatggttattatattcttactataattcagagtcaggatttccagttgccacagacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctatggttattatattcttactataattcagagtcaggatttccagttgccacagacaac 282
Query: 121 tctgggttttctcactttgaagttcacaatgcatgtcaaaaatgggcaatgctaggacgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tctgggttttctcactttgaagttcacaatgcatgtcaaaaatgggcaatgctaggacgg 222
Query: 181 ggtcaagtaataattattgaaggatgcatatgataaagatgaatcttaccacatacagtg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ggtcaagtaataattaatgaaggatgcatatgataaagatgaatcttaccacatacagtg 162
Query: 241 ggactatattcagctactataactgaattatgccatctataggaaaaaggatgagattgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ggactatattcagctactataactgaattatgccatctataggaaaaaggatgagattgg 102
Query: 301 aggtcatcaggctaagcagaataagacagagctggg 336
||||||||||||||||||||||||||||||||||||
Sbjct: 101 aggtcatcaggctaagcagaataagacagagctggg 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_o23.g1 MSMg01no419_o23.g1 CHROMAT_FILE:
MSMg01no419_o23.g1 PHD_FILE: MSMg01no419_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:37 2005
(409 letters)
>mm_chr8_33881601_33882409
Length = 809
Score = 659 bits (341), Expect = 0.0
Identities = 386/412 (93%), Gaps = 19/412 (4%)
Strand = Plus / Plus
Query: 1 ctcacctaatcaacagtatttcacctgccagcttcagtgacattcaactttgttctttct 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ctcacctaatcaacagtatttcacctgccagcttcagcgacattcaactttgttctttct 260
Query: 61 acttatcaccgtgttcatattactctgcagaaatattccctaaaaacta---ataggttt 117
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 acttatcaccgtgtttatattactctgcagaaatattccctaaaaactactaataggttt 320
Query: 118 tgttttgttttgctttgctttgctttgctttgctttgctttgctttgctttgctttgctt 177
| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttg----------ctttgctttgctttgctttgctttgctttgctttgctttgctt 370
Query: 178 tgctttgctttgctttgctttgctttgatttgatttgatttgatttgatttgatttgatt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgctttgctttgctttgctttgctttgatttgatttgatttgatttgatttgatttgatt 430
Query: 238 tgattttttttgagactgggtttctttgtgtaatcctggctatcctagaacaaactttac 297
| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 431 t------ttttgagactgggtttctttgtgtagtcctggctgtcctagaacaaactttac 484
Query: 298 aaaaccaggctggacttgaacttccagcgatccacctacctctgcctcccaagtgctggg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaaccaggctggacttgaacttccagcgatccacctacctctgcctcccaagtgctggg 544
Query: 358 attaaaggcgtgtaaccccagtgcccagctaanatgactaatacttaagaaa 409
|||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 545 attaaaggcgtgtaaccccagtgcccagctaaaatgactaatacgtaagaaa 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
