BAC Information

Click to search

BAC

Clone NameMSMg01-420B20
Chromosome8 (Build37)
Map Location 115,301,902 - 115,432,092
singlet/doubletdoublet
Overlap geneCntnap4
Upstream geneCfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420B20.T7 (MSMg01no420_b20.b1)MSMg01-420B20.TJ (MSMg01no420_b20.g1)
ACCAG515056AG515057
length716753
length of high quality
(start - end)
163 (335 - 497)479 (67 - 545)
definitionCHROMAT_FILE: MSMg01no420_b20.b1 PHD_FILE: MSMg01no420_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:50 2005CHROMAT_FILE: MSMg01no420_b20.g1 PHD_FILE: MSMg01no420_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,301,902 - 115,302,064)(115,431,614 - 115,432,092)
sequence
NTTTATCAATCAATTGTTGCCGCCGATAGACGACTATTACTACCAGAGGA
GCGGAGGTACTCCATTTCTTTCATAATGAGATGCTGCATCAACCATCCGC
TGCCAGAAAGAGTTTGTAATACGTCGTCATGGTTGCAGGACTACCTTCTA
AATGAGGAGACTACCGGCGACACCTCATCTGTTGTGCCGAGGACGGAGGA
CCACTTTTTTTTCATCCAGGGGAAACAACAACAACACTATCTGCCGGCAA
CGTTGGGAGAAGGTAATCAGCACAACATCAAGATGCATCTTACCATCTGA
TAAAGGAGGCAGCAAAAAGTTCTTTTCTAATACCTGCTGGCAGCCTCTGT
AGATTATATTATTATTTTTTAAAATTGAAAATGGATGAGAGCATTGGAAG
CTGTGGTCTCAATATATTATTCATTCTAAACTCTGAAAAACACCAGTGCT
CTAATCAGCTGTCTGAGTCTAAACTAGAAGTTCACAAATGACATTTGTAC
AGTGGTACTTTACCTGTGTCAAGATAATTTCTTCTATAGGGCCTCTAAAG
CAAAGATGTCACTGACATTTCCATTCAAAAAATAATGCTAGGGCTGGAGA
GATGGCTCGGTCTGTAAAGTGTTTGGCTCACAAGCATGAGGACTTGAGCT
CAGAGCCATGCATGGCACATTTGTAAAAGGCCAAGCACAGCAGCATGCCT
CTGTAACCTCACATTT
AGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAATTGTAGATGATACAATTGACTTTTTTTTTT
TTTGCCTTATGTATAGATGTTAGGAATCTATAAAAATGTATCTCACCTGT
AACTGCCCAGTAACAAACAGAGAACAAAATAAAAGTACCAATTCCAAGCA
AGCTCATTAATTTTTTTAAAGAAATAAATAATTAAAACCAATGGGCAAAA
TGGCTACCATTAACTTCCCGGCTAAACCTGAAATGAAGTTGTGGGGTTTC
ACCATTGATCACAGCCTCCTTCCAAACAGGAACTACAAGGCTGTAATTAT
TCTGAGAGGACAAGTTTCAAACAGCTTCTCCTGCCAATACAGCCGATTGA
GGTGATAGATAGCTTCATGACTCGAAAGGGCTTCAGGGCATCAATAAGTC
TTTTGCCTGAATCTGTCCCACGGCTGATGAAGTTTCACACTTCCTCAAGA
TCTCAATTTAGGCACCAAATCCTGTTGGCAGGGCTCCCTAATATGTCTAT
GATTATGGGGTGCAGAATGGCATCCTGTCGATATGTACATAGACATAACT
CATGCTCATATTCTCTTCTCAAACTGTCTCTGCTTGCAGTTTATTTCCTC
TGCAGCCAATAAAACAGGTGGATTTTTAAAAAGCACTGTGGTGAATTCCT
TCCAAAAAATGGTTGATCCAAAAAAGGGGATTCCTCTAGGAAAAGAATTA
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_b20.b1 MSMg01no420_b20.b1 CHROMAT_FILE:
MSMg01no420_b20.b1 PHD_FILE: MSMg01no420_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:50 2005
         (163 letters)



>mm_chr8_115301702_115302264
          Length = 563

 Score =  300 bits (155), Expect = 3e-86
 Identities = 161/163 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctggcagcctctgtagattatattattattttttaaaattgaaaatggatgagagcat 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctggcagcctctgtagtttatattattattttttaaaattgaaaatggatgagagcat 260

                                                                       
Query: 61  tggaagctgtggtctcaatatattattcattctaaactctgaaaaacaccagtgctctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tggaagctgtggtctcaatatattattcattctaaactctgaaaaacaccaatgctctaa 320

                                                      
Query: 121 tcagctgtctgagtctaaactagaagttcacaaatgacatttg 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagctgtctgagtctaaactagaagttcacaaatgacatttg 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no420_b20.g1 MSMg01no420_b20.g1 CHROMAT_FILE:
MSMg01no420_b20.g1 PHD_FILE: MSMg01no420_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:51 2005
         (479 letters)



>mm_chr8_115431243_115432121
          Length = 879

 Score =  911 bits (471), Expect = 0.0
 Identities = 477/479 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaattgtagatgatacaattgactttttttttttttgccttatgtatagatgttaggaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 agaattgtagatgctacaattgactttttttttttttgccttatgtatagatgttaggaa 791

                                                                       
Query: 61  tctataaaaatgtatctcacctgtaactgcccagtaacaaacagagaacaaaataaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tctataaaaatgtatctcacctgtaactgcccagtaacaaacagagaacaaaataaaagt 731

                                                                       
Query: 121 accaattccaagcaagctcattaatttttttaaagaaataaataattaaaaccaatgggc 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 730 accaattccaagcaagctcattaattttttttaagaaataaataattaaaaccaatgggc 671

                                                                       
Query: 181 aaaatggctaccattaacttcccggctaaacctgaaatgaagttgtggggtttcaccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaaatggctaccattaacttcccggctaaacctgaaatgaagttgtggggtttcaccatt 611

                                                                       
Query: 241 gatcacagcctccttccaaacaggaactacaaggctgtaattattctgagaggacaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gatcacagcctccttccaaacaggaactacaaggctgtaattattctgagaggacaagtt 551

                                                                       
Query: 301 tcaaacagcttctcctgccaatacagccgattgaggtgatagatagcttcatgactcgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcaaacagcttctcctgccaatacagccgattgaggtgatagatagcttcatgactcgaa 491

                                                                       
Query: 361 agggcttcagggcatcaataagtcttttgcctgaatctgtcccacggctgatgaagtttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agggcttcagggcatcaataagtcttttgcctgaatctgtcccacggctgatgaagtttc 431

                                                                      
Query: 421 acacttcctcaagatctcaatttaggcaccaaatcctgttggcagggctccctaatatg 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acacttcctcaagatctcaatttaggcaccaaatcctgttggcagggctccctaatatg 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)