BAC Information

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BAC

Clone NameMSMg01-420O09
Chromosome8 (Build37)
Map Location 66,158,405 - 66,158,731
singlet/doubletsinglet
Overlap genenone
Upstream geneSpock3
Downstream geneLOC384831, EG244495, Tll1, LOC100040989, Cpe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420O09.T7 (MSMg01no420_o09.b1)MSMg01-420O09.TJ (MSMg01no420_o09.g1)
ACCAG515654AG515655
length820748
length of high quality
(start - end)
---327 (322 - 648)
definitionCHROMAT_FILE: MSMg01no420_o09.b1 PHD_FILE: MSMg01no420_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:53 2005CHROMAT_FILE: MSMg01no420_o09.g1 PHD_FILE: MSMg01no420_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGGGNNNNNAANNAACNCCCNNCCNNNCGGGTGGNNNNNACTAAT
AATTGGGGGGCGAAGAGAAGGACCACTTCCCCACTTGCNNGGAANNNNNN
GNNCTTACAANCACCAGAGAGGNNNAACANCCNNAANCANCAGGGAAAGG
CAAANCAAAACAACCCCGCAGAACCACCNCACACCAGNCAGAAGGGGNAA
GAACAAAAANNCAGGGGACAGCAGAAGCGGGCGGGGAGGNGGAGAAAGAG
GAACACNCCNCCANGGNNGGGGGGAGNGCAGGCNGGNACAACCACTCTGG
AAANCAGACGGGCGAGACCACAGAAANAAGGACANAGNACNACCGGAGGA
ACCAGCAANATTTTTTTTTTGCANANANCCAGAAGANGCCCGAACGGGGA
AGAAGGACACACGCCCCACGAGGGGCAGAGCAGCCAGAGCGAGAAAAGCC
AGAAGCCGGAAAGAACCCAGAAGCGCCGCAACAGAGGAACGGGAACAGAA
AAAGGGGNACATCCACACAAGGGAGGACGACGCAGCAAGGAAAAAAAAGA
AANGCAAGAAACCCCAAGACAAAGGGAAGGAACAGGAGGGAAACAACCGG
AGGGAGGGAACACAGGCACAAAGAAAACCACAGAAAAGGGCCTCGCGGGA
CAAGGGGAAGACAACAACAAAACCAGGAAACCCAGAGAGAGAAGAAAAAA
AGGGGGTTAACCCCCGGAAGCCCAGAGAAGGAAGGAAAGACCGAAGAGGG
GGACACGAATGACCCCTGCTTTTATTTTGTGGGAAAAGAACAACTATTGT
GAAAGAAATTTTAAATAAAN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTCTAAGAGCCAAAAGTAGGTGCTAGGTATAGTGT
GGTACTATTAGGCAGTGGCTAGGATATTTAGACATTGGTGTGGTAATTGA
CAAACAGTATAGTTAAATGGGTGGCTGATGTGTAAAGATGAATTAAATGT
TAGAAAATACCTCATTGTGTGATCAAATAATTTTCTACAGATAAATAAGT
CCACAGTAAATTATCTTTGATATAACTATTATCAACAAATTTATATATCA
TAAGAAAAAATANGTANTCTCACTGAAAGTACAGACATAAGTGAATACAA
ATATCTGATCTTAATTTCAGTCTGTGAAGTCCTAGAATATTATAAAATCA
TAAAATAAAATATATGTGGTCAGATAAATGACACGACTCTCCAGATGCTG
AAGGGAAAACTTATAAGCAATTTCTACCACAAAACTTTAAGGGAATGAAA
AATGTATTACTGGAGGAAGCCATGCAGTCTCTCGTGTAGATATGTGCAGA
TCTGCAAATGCAGATCTCAGGGCTTTTTCTCAGTTGCACTGACTCTTTAA
AAGGTCTCTTGACCTCCCAGTAGATGGCTGCATATACCAATAGGCAAATT
GATCTCTTTATTCAGGACATTATTAACAGCAGCATAAAAGAACGACAAGG
ATGTGGGAGGAAATCAGAATAGAATATTCCAGGAGTGTTGCGAGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_o09.g1 MSMg01no420_o09.g1 CHROMAT_FILE:
MSMg01no420_o09.g1 PHD_FILE: MSMg01no420_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:53 2005
         (327 letters)



>mm_chr8_66158111_66158837
          Length = 727

 Score =  609 bits (315), Expect = e-179
 Identities = 324/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaaagtacagacataagtgaatacaaatatctgatcttaatttcagtctgtgaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 actgaaagtacagacataagtgaatacaaatatctgatcttaatttcagtcagtgaagtc 562

                                                                       
Query: 61  ctagaatattataaaatcataaaataaaatatatgtggtcagataaatgacacgactctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagaatattataaaatcataaaataaaatatatgtggtcagataaatgacacgactctc 502

                                                                       
Query: 121 cagatgctgaagggaaaacttataagcaatttctaccacaaaactttaagggaatgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 cagatgctgaagggaaaacttataagcaatttctaccacaaaactttaaggaaatgaaaa 442

                                                                       
Query: 181 atgtattactggaggaagccatgcagtctctcgtgtagatatgtgcagatctgcaaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtattactggaggaagccatgcagtctctcgtgtagatatgtgcagatctgcaaatgc 382

                                                                       
Query: 241 agatctcagggctttttctcagttgcactgactctttaaaaggtctcttgacctcccagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatctcagggctttttctcagttgcactgactctttaaaaggtctcttgacctcccagt 322

                                      
Query: 301 agatggctgcatataccaataggcaaa 327
           |||||||||||||||||||| ||||||
Sbjct: 321 agatggctgcatataccaatcggcaaa 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)