BAC Information

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BAC

Clone NameMSMg01-420P15
Chromosome8 (Build37)
Map Location 25,803,287 - 25,803,818
singlet/doubletsinglet
Overlap geneAdam3
Upstream geneZmat4, 1810011O10Rik, Indol1, Indo, Adam18
Downstream geneAdam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420P15.T7 (MSMg01no420_p15.b1)MSMg01-420P15.TJ (MSMg01no420_p15.g1)
ACCAG515714AG515715
length734763
length of high quality
(start - end)
112 (366 - 477)532 (63 - 594)
definitionCHROMAT_FILE: MSMg01no420_p15.b1 PHD_FILE: MSMg01no420_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:58 2005CHROMAT_FILE: MSMg01no420_p15.g1 PHD_FILE: MSMg01no420_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATCATAAATTGCGGCGGTAAAAGAATAATACTTTCAGAGGACGGNG
GAANTCCCTTCCTACCCAATGGCATTGATGGGGCCCACAAAGTTGGAATA
GGCGGTGCCCTCTTTTTCTCTAAATTCTAAAAGGTCTTTAAATTCTTTAT
TTCTTACCTTACCAAATTATCATTGAGTAGAGAGTTGTTCAACTAAAATG
AGTTTCCTTTTGTTTTGGTGGTTATGGAAAACCAGCCTTAGCCTGTGGTA
ATCTTATAGTGTGTGGGATTAATTCAATCTTCTTGTTTTTCTTGAGGCTT
GTATTGTGTCTAATCATATGTTTTGTTTTGGAGAAGGTACCATGAGGCGC
TGAAAAGAATGTATACTCTTTTGTTTTAGAGAGAAATGTTCTGTAGCTGT
CTGCTAAATCTATTTTGTTCATAACTTCTGTTAGTTTCACGGGGTCTCTG
TTTAGTTTCTGTTTCCATGATCTGCCCATTGGTAAGAGTGGGGTGTCGAA
GTCTCCCACTATTACTATGCGAGGTTAAATGTGTGGCCCGAACTTAAGTA
ATGCTTCTTTTATAAATGTGGACGCCCTTGTCCTTGTTTCATAGAGGCTT
AGAACTGAGAGTTCTTCCAGGCGGATTCTCTCTTTGTTGAGGATGATGTA
TCTTTTGCCCTCTTTTTTTGTATATTTTTGCCTCGACAACCTATTTCATT
GGCATATTAAAATTGCCTTACCCCCCCCTGGCTT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACACATTTGCCACAACATAAGTAGAAAGGCCAAATATT
CTCTTTGTATTGAAGTTTTCAATTTTGGGGTATTTATAACTTCATATTTA
TAGTCAATGCTTCAGTTTGTAAAGGTGCTTTCACACCAGGTGCCTCTCCT
TTATGATTATTTGCTTCTTTTGTTTTAACCTTTTCTATTTTAAGTTTATT
GCTAATTTACACTTTCCTCTTGGCTTTTCATTTTTTAAAAACACATTAAA
TATACATACACTAACAATGAAGTCATTATTCTATAAAAATTAATATGGGG
TAAAAACACTTTTAAAGAAATCTGTAAGTAGTCCACTTTTTATTAAAATA
CCCGCTAATTTTGTGTTCTTGCCATTGTATAACTCATGTTTAACTTCACA
GAAATGTCCAGATGTGTCTACTAGATGATTTAGCAGGGAAGAGAGCAGAC
TGAGAAAAAGAGGCCTTGTGGAAATATGTTGCAGTAGGTGTAAATGGCAA
GTCCCAGAGGGACCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNN
NTNNNNNNNNTTTNNNTTTTTTTTTTTTTTTNNTNTTTTTTTTTTNTNTT
TTTTTTTTNTNTTTTTTTTTTNNNNTTTTTTTTTTTTTTTTTTTTTTTNN
TTTTTTTTTTTTTTTTTCCTTTTTTTTNNNTTNTCTTTTTTTTTTTTTTT
TTTTTTTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_p15.g1 MSMg01no420_p15.g1 CHROMAT_FILE:
MSMg01no420_p15.g1 PHD_FILE: MSMg01no420_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:58 2005
         (532 letters)



>mm_chr8_25803087_25804018
          Length = 932

 Score = 1021 bits (528), Expect = 0.0
 Identities = 531/532 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacatttgccacaacataagtagaaaggccaaatattctctttgtattgaagttttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacatttgccacaacataagtagaaaggccaaatattctctttgtattgaagttttcaa 260

                                                                       
Query: 61  ttttggggtatttataacttcatatttatagtcaatgcttcagtttgtaaaggtgctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttggggtatttataacttcatatttatagtcaatgcttcagtttgtaaaggtgctttc 320

                                                                       
Query: 121 acaccaggtgcctctcctttatgattatttgcttcttttgttttaaccttttctatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaccaggtgcctctcctttatgattatttgcttcttttgttttaaccttttctatttta 380

                                                                       
Query: 181 agtttattgctaatttacactttcctcttggcttttcattttttaaaaacacattaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttattgctaatttacactttcctcttggcttttcattttttaaaaacacattaaata 440

                                                                       
Query: 241 tacatacactaacaatgaagtcattattctataaaaattaatatggggtaaaaacacttt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacatacacaaacaatgaagtcattattctataaaaattaatatggggtaaaaacacttt 500

                                                                       
Query: 301 taaagaaatctgtaagtagtccactttttattaaaatacccgctaattttgtgttcttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagaaatctgtaagtagtccactttttattaaaatacccgctaattttgtgttcttgc 560

                                                                       
Query: 361 cattgtataactcatgtttaacttcacagaaatgtccagatgtgtctactagatgattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattgtataactcatgtttaacttcacagaaatgtccagatgtgtctactagatgattta 620

                                                                       
Query: 421 gcagggaagagagcagactgagaaaaagaggccttgtggaaatatgttgcagtaggtgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagggaagagagcagactgagaaaaagaggccttgtggaaatatgttgcagtaggtgta 680

                                                               
Query: 481 aatggcaagtcccagagggacctcgtgtgtgtgtgtgtgtgtgtgtgtgtgt 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatggcaagtcccagagggacctcgtgtgtgtgtgtgtgtgtgtgtgtgtgt 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)