Query= MSMg01no421_p11.b1 MSMg01no421_p11.b1 CHROMAT_FILE:
MSMg01no421_p11.b1 PHD_FILE: MSMg01no421_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:19 2005
(558 letters)
>mm_chr8_50443491_50444448
Length = 958
Score = 799 bits (413), Expect = 0.0
Identities = 457/481 (95%), Gaps = 22/481 (4%)
Strand = Plus / Minus
Query: 94 atgcata-atgcatatatattatgtataat-------------aattatgtatatat-tt 138
||||||| || |||||||||||||||||| |||||| ||||||| ||
Sbjct: 955 atgcatatat--atatatattatgtataatagttatatataaaaattatatatatatatt 898
Query: 139 atatatatatatttgtgtgtgtgactgaaatttt-atcctgagctttgttaacctaatgt 197
||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 897 -tatatatatatttctgtgtgtgactg-aattttaatcctgagctttgttaacctaatgt 840
Query: 198 agctatattaaaactacacacacacacacatatattatatatattaaagctattttatat 257
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 agctatattaaaact--acacacacacacatatattatatatattaaagctattttatat 782
Query: 258 attatgtatataatatatattatgcattttcctcatgtatggttatttttatttacttaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 attatgtatataatatatattatgcattttcctcatgtatggttatttttatttacttaa 722
Query: 318 ttctttcggtgaacattgaagataagaatgtccttcttacccaagacaaaaattattttc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttctttcggtgaacattgaagataagaatgtccttcttacccaagacaaaaattattttc 662
Query: 378 taatgcttccttcaggaactgtatgttgttttcttataaaaaatccttctgttcagagga 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taatgcttccttcaggaactgtatgttgttttcttataaaaaatccttctgttcagagga 602
Query: 438 tatattagacctcaaatctccagcctctgatgttccagggtcctctgcatgtctgtttca 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tatattagacctcaaatctccagcctctgatgttccagggtcctctgcatgtctgtttca 542
Query: 498 ttcatgatttctgcagatgagggtcccctcacccagcacactacagctctataattactt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttcatgatttctgcagatgagggtcccctcacccagcacactacagctctataattactt 482
Query: 558 t 558
|
Sbjct: 481 t 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_p11.g1 MSMg01no421_p11.g1 CHROMAT_FILE:
MSMg01no421_p11.g1 PHD_FILE: MSMg01no421_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:19 2005
(481 letters)
>mm_chr8_50308740_50309620
Length = 881
Score = 899 bits (465), Expect = 0.0
Identities = 477/481 (99%)
Strand = Plus / Plus
Query: 1 tcctaggatgacggagcctgagacactctccctgtgttattacaaagtggagaggtttct 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tcctaggatgacggagcctgagacactctccctgtgttattacaaaatggagaggtttct 260
Query: 61 catttactgctggtgaaaagtgtctattgtggcttctaataaaaacctgtgaagccgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttactgctggtgaaaagtgtctattgtggcttctaataaaaacctgtgaagccgcat 320
Query: 121 gggtgcaaagtaatttttttcaactcttcaggaaactggtggcaatgctaagttcactgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtgcaaagtaatttttttcaactcttcaggaaactggtggcaatgctaagttcactgt 380
Query: 181 ttgagctctgggtgtgaagtatttcactctctctgtgatggcaactttacattcgccctg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ttgagctctgggtgtgaagtatttcactctctctgtgatggcaactttacatccgccctg 440
Query: 241 taacctattcttacaaaccgcgtaattgggactagatttcacacaagggcgacgtttcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacctattcttacaaaccgcgtaattgggactagatttcacacaagggcgacgtttcta 500
Query: 301 ttttattggctgcatatgattgttctaaacaccaaactttataaatgacacatgcgtcgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttattggctgcatatgattgttctaaacaccaaactttataaatgacacatgcgtcgc 560
Query: 361 acgtgagcatcatcaatctctggttgtacttggccgtgttgcggaacgctgacaagatac 420
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 acgcgagcatcatcaatctctggttgtactttgccgtgttgcggaacgctgacaagatac 620
Query: 421 agagcttgggaaggcctaggcagcatagtgcctgatcacagaaggcagaaaaccccgaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagcttgggaaggcctaggcagcatagtgcctgatcacagaaggcagaaaaccccgaca 680
Query: 481 t 481
|
Sbjct: 681 t 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
