BAC Information

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BAC

Clone NameMSMg01-423K08
Chromosome8 (Build37)
Map Location 4,622,956 - 4,623,201
singlet/doubletsinglet
Overlap geneBC003267
Upstream genePcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533
Downstream geneLOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423K08.T7 (MSMg01no423_k08.b1)MSMg01-423K08.TJ (MSMg01no423_k08.g1)
ACCAG517753AG517754
length747753
length of high quality
(start - end)
246 (60 - 305)241 (65 - 305)
definitionCHROMAT_FILE: MSMg01no423_k08.b1 PHD_FILE: MSMg01no423_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:22 2005CHROMAT_FILE: MSMg01no423_k08.g1 PHD_FILE: MSMg01no423_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCGCTATACGATTCACTTTTCGAAGAGGATCCGCGGAATTCCTAATT
TTCCAGATTTGCATCTTTCTTGTTTCCAGAACCAGCACAAGATGGGTGAT
CCTGTCAGTTTGACTTCTAAATTCAAACAGACCCTGCTACACTTGAACCA
CAGTTGCAGCAGATTTTATATGAAGTTCTTTCCTGGGACTAGGAATAACT
ATGCCTCCTTCTTTCATTTATTTAATACTTAGCAGTATTACCATTAGGGC
ACGTACCTGGACCTTCTCTTTAATGGCAATAATCTCCTTGAAAATTCCTG
CTTCTGTTTCTTCACTTGACTGCCATCTGAAACTACCTAGTGCTGTTTTT
CTTTACAAAACATAAACCGCATTATTTCTGCCCCACATGTTGCTTTTTTC
ACCATACATGTGACTGAGTCATTAGTAACAGCTATCCAACAGGTTTAGTA
TTTTGTCTACAAAATCCATCTATTATTTTTTAAGCCTGCCTTACTCAGTT
TCTCAGGTCATGGCTGATTATTTTAGATCTGCGGTCTAATTACCACTCAA
TCGACCTCTTGCTTACTTTTTCATGGAGTTTATTTTTTCCTTGCCCACCC
CATGACCCTGATTTCCTTCTTGTTTGTCCCCTCTTCCAACCCCTGTCTTC
CTTCTCCCCATTTTTTTCGCCCGCCCCACCCCTTTTGTTTCCCTTTTTTT
ACGCCATTTTTCCCCCCTTTTTTCTCTATATTCCTTTTTTCTCCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAACACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAATACTCCTCCAT
TGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTTCNCTAATATTGGACATAGTACTACCGGATGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
TCTACATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTT
ACACTACGGAGCACTACTCACCTATTAAAAAGAATGAATTTATTGATTTC
CTATCTCTCATGTTTGTATCCTGGAGGGCCTCATCTTGACTTGTTTTTTT
TTCTCCCCCTAATTTTTCTTCCCCTCTATTTTTTTTACTGATAATTTGTA
TTTTATTTCTCCATCCCTTTGTTACCCTTCCATTCTAATATTTAATTCGT
TTCTTCCCCCCGTATATCTTCCACTTTTCTTCTCCCTTTTTTCCTTTCTC
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_k08.b1 MSMg01no423_k08.b1 CHROMAT_FILE:
MSMg01no423_k08.b1 PHD_FILE: MSMg01no423_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:22 2005
         (246 letters)



>mm_chr8_4622756_4623401
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcatctttcttgtttccagaaccagcacaagatgggtgatcctgtcagtttgacttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgcatctttcttgtttccagaaccagcacaagatgggtgatcctgtcagtttgacttcta 387

                                                                       
Query: 61  aattcaaacagaccctgctacacttgaaccacagttgcagcagattttatatgaagttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aattcaaacagaccctgctacacttgaaccacagttgcagcagattttatatgaagttct 327

                                                                       
Query: 121 ttcctgggactaggaataactatgcctccttctttcatttatttaatacttagcagtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttcctgggactaggaataactatgcctccttctttcatttatttaatacttagcagtatt 267

                                                                       
Query: 181 accattagggcacgtacctggaccttctctttaatggcaataatctccttgaaaattcct 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 266 accattagggcacgtacctggaccttctctttaatggtaataatctccttgaaaattcct 207

                 
Query: 241 gcttct 246
           ||||||
Sbjct: 206 gcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)