BAC Information

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BAC

Clone NameMSMg01-425G03
Chromosome8 (Build37)
Map Location 64,926,984 - 64,927,512
singlet/doubletsinglet
Overlap genenone
Upstream geneCbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775
Downstream geneLOC384830, LOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425G03.T7 (MSMg01no425_g03.b1)MSMg01-425G03.TJ (MSMg01no425_g03.g1)
ACCAG519078AG519079
length731509
length of high quality
(start - end)
529 (67 - 595)---
definitionCHROMAT_FILE: MSMg01no425_g03.b1 PHD_FILE: MSMg01no425_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:35 2005CHROMAT_FILE: MSMg01no425_g03.g1 PHD_FILE: MSMg01no425_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGAACTTTCAGAGCAAAGTAGAATATGAAGGATGGCTTTACAGTTTTC
CTTAACCCTCTCCTTTGTATTTTCATGACCATTCTTCAAGTTTTCATCAT
TTTTCATAGCAGTCAAGAACATGCAATTTTTCCATCAGAAATTATTTGAA
ATGTAAAAATGTTGCCTTAACAACATAAGTACATTCAGCATATAATATCC
CTTTTCCAGGTTTAATTACTCTTTCGTTTCTTCTTAGATTGTGTTGCCCT
CCAAAGCAGGCACAAAAGATTTTTGTTTAATTGGTTAGTAAGGCCTAAAC
TTCAAATGAGACAATATGACAGTGAGACCAGGAAAAAAAAAGGTGGAGGG
GACCCAATAAACAGCTCATCGTGAAAAAAGGAAATGATCTGTTTTCCTTA
GAATTGCTCCCCTTATGGACAAGAGAGGCATGGAGATGCCAAATCCTGAT
CCATCCTGGTTTGGCAAGTACCTTCAGGGCATCAACTCTAAGGCAATTCC
TGCTTGCTTGCCTTGAGAGAGGCCATCTTTAGAATAAAGGATAAGACCTT
CATCACAGAAACATACAAACCCCAGAAAGAACTGTTTAAGGCTGGTCACG
ACAAGGGAAAGTCAGAAACAGCCCTATATACCCTTTCCTTTAGAAAAAGG
GCAGTATCTTGTTTTGCCTCTGTGAACACCN
NCTGCGCCCCTGCCCCACTTAGTACCTATAAAGTCCCGAATCCCTTATAA
ATCCCTTTGCTGAAAAATTTTAATTGCTCTGGTAAAAGNANAGAATGGCA
AGGCCCAGNCCCATTACGTTTNNNNCCCCCACAAAAAACCTCCCCCCAAA
ACTCTCCTNTTTTTGTTTCCTCCCCNNNNTTTCTTAAAGGGGCGCTGGCG
GGGGGGGGGGGGGCGCGGGGCGGGATGGCGGGGGCNNNCCNNNTNTNNTG
CTGTTTTTCCCCCNNNNTNNTCCCCCCCGCCNNCCCNNNNNNAAAATNNA
AAAACCCAAAAANNNNNAATTAATATGGGGGGTNNCCCCNNNNNAAAANA
ANNNNNAANNNNCNNNNNANNNNNNNNNNTTTNNNNNTTNNTTTCAAANN
NNNTTNNNNANNNNNNAANNAATTTTTTTTTTTGTNCCCTNNNNNNNNNN
TNNNNNTTNNNNNTTTNNNNNNNNNNNNNNTNTNNANNTTNNATATTTTT
TTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_g03.b1 MSMg01no425_g03.b1 CHROMAT_FILE:
MSMg01no425_g03.b1 PHD_FILE: MSMg01no425_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:35 2005
         (529 letters)



>mm_chr8_64926784_64927712
          Length = 929

 Score =  992 bits (513), Expect = 0.0
 Identities = 525/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtagaatatgaaggatggctttacagttttccttaaccctctcctttgtattttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aaagtagaatatgaaggatggctttacagttttccttaaccctctcctttgtattttcat 670

                                                                       
Query: 61  gaccattcttcaagttttcatcatttttcatagcagtcaagaacatgcaatttttccatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 669 gaccattcttcaagttttcatcatttttcatagcagtcaagaacatgaaatttttccatc 610

                                                                       
Query: 121 agaaattatttgaaatgtaaaaatgttgccttaacaacataagtacattcagcatataat 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 609 agaaattatttgaaatgtaaaaatgttgccttaacaagataagtacattcagcatataat 550

                                                                       
Query: 181 atcccttttccaggtttaattactctttcgtttcttcttagattgtgttgccctccaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atcccttttccaggtttaattactctttcgtttcttcttagattgtgttgccctccaaag 490

                                                                       
Query: 241 caggcacaaaagatttttgtttaattggttagtaaggcctaaacttcaaatgagacaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caggcacaaaagatttttgtttaattggttagtaaggcctaaacttcaaatgagacaata 430

                                                                       
Query: 301 tgacagtgagaccaggaaaaaaaaaggtggaggggacccaataaacagctcatcgtgaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 429 tgacagtgagaccaggaaaaaaaaaggtggaggggacccaataaacagctcatcatgaaa 370

                                                                       
Query: 361 aaaggaaatgatctgttttccttagaattgctccccttatggacaagagaggcatggaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 369 aaaggaaatgatctgttttccttagaattgctccccttatggacaagagaggcatcgaga 310

                                                                       
Query: 421 tgccaaatcctgatccatcctggtttggcaagtaccttcagggcatcaactctaaggcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgccaaatcctgatccatcctggtttggcaagtaccttcagggcatcaactctaaggcaa 250

                                                            
Query: 481 ttcctgcttgcttgccttgagagaggccatctttagaataaaggataag 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttcctgcttgcttgccttgagagaggccatctttagaataaaggataag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)