BAC Information

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BAC

Clone NameMSMg01-425H15
Chromosome8 (Build37)
Map Location 79,053,192 - 79,219,797
singlet/doubletdoublet
Overlap genenone
Upstream gene1700007B14Rik, LOC666036, LOC100039185, EG631594, LOC666226
Downstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425H15.T7 (MSMg01no425_h15.b1)MSMg01-425H15.TJ (MSMg01no425_h15.g1)
ACCAG519150AG519151
length763770
length of high quality
(start - end)		538 (33 - 570)453 (62 - 514)
definitionCHROMAT_FILE: MSMg01no425_h15.b1 PHD_FILE: MSMg01no425_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:42 2005CHROMAT_FILE: MSMg01no425_h15.g1 PHD_FILE: MSMg01no425_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,053,192 - 79,053,725)(79,219,345 - 79,219,797)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTTGGG
AATCTGTGATGCATATATAACTTAGGGCAATTCTTTATGTACATTTCTCT
GGTAAAAATATTTTTGTGTCAATAGATGCCTCATTATTATTCGTTTGACC
ATAAATGTTTCCTGTCCTTTTGTTTCTTAAACTACCATTTTAATCCTCAA
TTGTTTCTACACACTACATACCCACTTTGTTTACCCTGGCAGAGCAAACA
TCTCTACAAAGTGTCATGGATTGCTTTTAGCCATGTGGTCTGTGAAAGTA
AATGTCATTATGGCTTGTCATCTCCAAGGCTGGGGGGAGCTGCCACTTAA
AGTGTAATGCAGCAGAAAGTGCTGAGGGCTCCTGGCTCTCTGGACACTCA
TCTTTCTGGAAGTGAGCAACACTGTTCAACGCCAACATCCATGTCAGCAA
AGAGACTGGCATAGGAAGTCACCTGACTCTAAACTGTTGCCATCTAACAG
TTTTGCAAACGTGGACTACTAATAATCCAGCCCCATGTCAGTCTTCAGAG
GTTTTCTCTCTCCTGGGAGAAAGTAGACCTCTTTGGTTCCCTGGATCAGT
TCATTCCTAAATTCGCCACTCTCATTAGCAAACGCAGTCTGCCAAGGGCC
AGAGGGGTGGAAATGTCAGAGCCAACACTGCACTACCTCATTGGGCATCT
TTGTAAAAAGCAGTTACCCAATAATATCCAAAATGACGTGGGAATGTCCC
AAAACCCTTCTGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCATAGGAGTGAACACACTCCTTTCTTTTTCTAGTCATGC
TGGGTCCCTCTAACACTCCTTTTAAAAGCATCTAATCAGGCCAGCCAGCA
AAGCAGAAGAAGTATGGTCTTCAGGGACTCAGTCTTACATCATAGAGTTG
TAGAAGGATCCATCGGAAGCTGAGAGATCCTAGATAAACATTCAGTGCAA
ATGGGGCTTACCTCTTGAGAAAGTCTTGTGAGGAGACATGTGAGGTAGGA
GGGATGGTAGACAGCCAGAGCTTCTCTGAGATCTGTCTGGGACGTGGAGG
ACAGGTGGGATGATTATTCTCATAGATGCCCGAGCCAGAAGTTACACTGA
GACTCAGGGCCATTGTGAGGGGTGTGTCATGGAAACTCTGCCAGAGGTAT
CCCTGTTCAAACGGCAAAGGACACAGGAAAGATGGAGAGGAAAATGAGGT
CCATTCATATGTGCTCTAACAGTAGAGGGACCAAGATACAGAGTCTGAGA
TTTGACACTGTTGTATTTTCGAGACCAAATCTCATGTTCCAGAAGGACAG
ATGAAAAGCTGGGGGGAGGCTTAATTGGGATAAATTAAAAAAAAATTGGC
CCCCCCTTGACATGGTATAAAGCTAGAGGCTCCCCTGTCTCCCGGGAGCC
CCATTGGTTCCCCAAGGGGGGGAGGTGCTTTCCCCTTTCCCCCCAAAAGA
ATGTTTGTGTAACTGATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_h15.b1 MSMg01no425_h15.b1 CHROMAT_FILE:
MSMg01no425_h15.b1 PHD_FILE: MSMg01no425_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:42 2005
         (538 letters)



>mm_chr8_79052988_79053925
          Length = 938

 Score =  994 bits (514), Expect = 0.0
 Identities = 529/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattttgggaatctgtgatgcatatataacttagggcaattctttatgtacattt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttgggaagctgtgatgcatatataacttagggcaattctttatgtacattt 264

                                                                       
Query: 65  ctctggtaaaaatatttttgtgtcaatagatgcctcattattattcgtttgaccataaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctggtaaaaatatttttgtgtcaatagatgcctcattattattcgtttgaccataaat 324

                                                                       
Query: 125 gtttcctgtccttttgtttcttaaactaccattttaatcctcaattgtttctacacacta 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttcctgtcctttcgtttcttaaactaccattttaatcctcaattgtttctacacacta 384

                                                                       
Query: 185 catacccactttgtttaccctggcagagcaaacatctctacaaagtgtcatggattgctt 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catacccaatttgtttaccctggcagagcaaacatctctacaaagtgtcatggattgctt 444

                                                                       
Query: 245 ttagccatgtggtctgtgaaagtaaatgtcattatggcttgtcatctccaaggctggggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttagccatgtggtctgtgaaagtaaatgtcattatggcttgtcatctccaaggctggggg 504

                                                                       
Query: 305 gagctgccacttaaagtgtaatgcagcagaaagtgctgagggctcctggctctctggaca 364
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagctgccatttaaagtgtaatgcagcagaaagtgctgagggctcctggctctctggaca 564

                                                                       
Query: 365 ctcatctttctggaagtgagcaacactgttcaacgccaacatccatgtcagcaaagagac 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcatctttctagaagtgagcaacactgttcaacgccaacatccatgtcagcaaagagac 624

                                                                       
Query: 425 tggcataggaagtcacctgactctaaactgttgccatctaacagttttgcaaacgtggac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggcataggaagtcacctgactctaaactgttgccatctaacagttttgcaaacgtggac 684

                                                                 
Query: 485 tactaataatccagccccatgtcagtcttcagaggttttctctctcctgggaga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tactaataatccagccccatgtcagtcttcagaggttttctctctcctgggaga 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_h15.g1 MSMg01no425_h15.g1 CHROMAT_FILE:
MSMg01no425_h15.g1 PHD_FILE: MSMg01no425_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:42 2005
         (453 letters)



>mm_chr8_79218979_79219831
          Length = 853

 Score =  799 bits (413), Expect = 0.0
 Identities = 443/453 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataggagtgaacacactcctttctttttctagtcatgctgggtccctctaacactcctt 60
           ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 819 cataggagtgaacccactcctttccttttctagtcatgctgggtccctctaaaactcctt 760

                                                                       
Query: 61  ttaaaagcatctaatcaggccagccagcaaagcagaagaagtatggtcttcagggactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ttaaaagcatctaatcaggccagccagcaaagcagaagaagtatggtcttcagggactca 700

                                                                       
Query: 121 gtcttacatcatagagttgtagaaggatccatcggaagctgagagatcctagataaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gtcttacatcatagagttgtagaaggatccatcggaagctgagagatcctagataaacat 640

                                                                       
Query: 181 tcagtgcaaatggggcttacctcttgagaaagtcttgtgaggagacatgtgaggtaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tcagtgcaaatggggcttacctcttgagaaagtcttgtgaggagacatgtgaggtaggag 580

                                                                       
Query: 241 ggatggtagacagccagagcttctctgagatctgtctgggacgtggaggacaggtgggat 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggatggtagacagcctgagcttctctgagatctgtctgggacgtggaggacaggtgggat 520

                                                                       
Query: 301 gattattctcatagatgcccgagccagaagttacactgagactcagggccattgtgaggg 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 519 gattattctcatagatgcccgagccagaaattacactgagactcagggccattgtgaggg 460

                                                                       
Query: 361 gtgtgtcatggaaactctgccagaggtatccctgttcaaacggcaaaggacacaggaaag 420
           ||||||||||||||||||||||||| ||||||| || ||| |||||||||||||||||||
Sbjct: 459 gtgtgtcatggaaactctgccagagctatccctattaaaatggcaaaggacacaggaaag 400

                                            
Query: 421 atggagaggaaaatgaggtccattcatatgtgc 453
           |||||||||||||||||||||||||||| ||||
Sbjct: 399 atggagaggaaaatgaggtccattcatacgtgc 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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